Mock Version: 1.4.14 Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'], chrootPath='/var/lib/mock/f31-build-86219-31650/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1564704000 Wrote: /builddir/build/SRPMS/seqan-1.4.2-39.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'], chrootPath='/var/lib/mock/f31-build-86219-31650/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1564704000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TBBr08 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf seqan-1.4.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd seqan-1.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (seqan-docpath.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 + echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.cpp' -exec chmod 0644 '{}' ';' + cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt + cp -p core/apps/rabema/LICENSE GPLv3+.txt + cp -p LICENSE BSD.txt + cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Patch #0 (seqan-docpath.patch): patching file util/cmake/SeqAnBuildSystem.cmake Patch #1 (seqan-exclude_splazers_fiona_tests.patch): patching file core/apps/splazers/CMakeLists.txt patching file core/apps/fiona/CMakeLists.txt Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.l9bbka + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + mkdir -p build/Release + pushd build/Release + SEQAN_OPT_FLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC' + cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib64 -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib64 -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib64 -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE ../.. BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_SKIP_INSTALL_RPATH BUILDSTDERR: SEQAN_APP_VERSION BUILDSTDERR: SHARE_INSTALL_PREFIX BUILDSTDERR: SYSCONF_INSTALL_DIR + make -j1 all ~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2 -- The C compiler identification is GNU 9.1.1 -- The CXX compiler identification is GNU 9.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - failed -- Detecting C compile features -- Detecting C compile features - failed -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring core -- Configuring core/apps -- Configuring core/apps/dfi -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- Determined version is 1.4.2 -- Found PythonInterp: /usr/bin/python3 (found version "3.7.4") -- Configuring core/apps/fiona -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Boost version: 1.69.0 -- Configuring core/apps/mason -- Configuring core/apps/micro_razers -- Configuring core/apps/pair_align -- Configuring core/apps/rabema -- Configuring core/apps/razers -- Configuring core/apps/razers2 -- Configuring core/apps/sak -- Configuring core/apps/sam2matrix -- Configuring core/apps/samcat -- Configuring core/apps/seqan_tcoffee -- Configuring core/apps/seqcons -- Configuring core/apps/snp_store -- Boost version: 1.69.0 -- Configuring core/apps/splazers -- Configuring core/apps/stellar -- Configuring core/apps/tree_recon -- Configuring extras -- Configuring extras/apps -- Configuring extras/apps/alf -- Configuring extras/apps/breakpoint_calculator -- Configuring extras/apps/bs_tools -- Boost version: 1.69.0 -- Configuring extras/apps/fx_tools -- Configuring extras/apps/gustaf -- Configuring extras/apps/insegt -- Configuring extras/apps/mason2 -- Configuring sandbox/jagla/apps/ngs_roi -- Configuring extras/apps/param_chooser -- Configuring extras/apps/razers3 -- Performing Test CXX11_FOUND -- Performing Test CXX11_FOUND - Success -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 - found -- Configuring extras/apps/rep_sep -- Configuring extras/apps/searchjoin -- Configuring extras/apps/seqan_flexbar -- Configuring extras/apps/sgip -- Configuring extras/apps/variant_comp -- Configuring docs -- Configuring manual -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) -- Sphinx not found, not building sphinx manual as a test. -- Configuring sandbox -- Configuring util/py_lib -- Python nosetests ('import nose' failed), cannot add tests for seqan.dox -- Found Java: /usr/bin/java (found version "1.8.0_212") -- Configuring done -- Generating done -- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILDIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:157: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:153: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:147: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:161: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:157: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:151: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:160: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:156: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::TopDown >; typename seqan::Size > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::Dfi; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Preorder_; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::ParentLinks]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(seqan::Iter, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = seqan::IndexWotd >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:150: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:157: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:157: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:153: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:153: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:147: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:147: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:161: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:161: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:157: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:157: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:151: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:151: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:160: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:160: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:156: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:156: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(seqan::Index, seqan::IndexWotd > >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename seqan::Size, seqan::IndexWotd > > >::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:150: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:38: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(seqan::Index, seqan::IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(seqan::Index > >&, WotdDir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; seqan::WotdDir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexWotd >; TFibre = seqan::FibreDir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::Dfi]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:150: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:76: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 451 | *(saBeg + index.sentinelBound++) = *itSA; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:153: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:147: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: In function 'int main(int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:845:4: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 845 | switch (options.alphabet) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:851:3: note: here BUILDSTDERR: 851 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:852:4: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 852 | switch (options.alphabet) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:858:3: note: here BUILDSTDERR: 858 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ /seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_core make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= Scanning dependencies of target dfi make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp [ 1%] Linking CXX executable ../../../bin/dfi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../../bin/dfi -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Built target dfi make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23: required from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::False) [with TValueSource = Stats; TValueTarget = Stats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Stats; TValueTarget = Stats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = Stats; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = Stats; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = Stats; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:843:37: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 97 | struct Stats BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 97 | struct Stats BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'Stats::Stats(const Stats&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> > >; TValue = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TString2 = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> > >; TValue = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20: required from 'typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type seqan::read2(seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFile = std::basic_fstream; TSpec = void; TTag = seqan::Tag; typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:809:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= Scanning dependencies of target compute_gain make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp [ 3%] Linking CXX executable ../../../bin/compute_gain cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../../bin/compute_gain -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Built target compute_gain make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= Scanning dependencies of target fiona_illumina make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++ -DFIONA_ILLUMIIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4212 | if (options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4215 | Dna5String tmp; BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4235 | if (options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4238 | double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4413 | if (options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4416 | if (options.errorrate != 0 && options.wovsum != 0) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4684 | for (unsigned i = 0; i < length(store.readSeqStore); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 4689 | TFionaQgramIndex qgramIndex(prefixes); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4852 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4854 | if (inTerm && options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5027 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5032 | resize(store.readSeqStore, readCount); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5479 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5483 | bool autoCycles = (options.cycles == 0 || options.cycles == 1000); BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5495 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5497 | if (!loadReadsNoNames(store, options.inputFilename, options)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5561 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5563 | options.autolevel = (options.fromLevel <= 1); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5671 | if (res != 0) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5674 | if (options.verbosity >= 1 && options.cycles > 1) BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, seqan::Tag) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<10> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TWithConstraints = seqan::True; TStepSize = long unsigned int; TParallelTag = seqan::Parallel_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 438 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 445 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 472 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const seqan::Pair&, const seqan::String&) [with TResult = seqan::Pair >; TSize = long unsigned int; TSpec = seqan::Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16: required from 'typename seqan::Suffix::Type seqan::suffix(seqan::StringSet&, const TPosition&) [with TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPosition = seqan::Pair >; typename seqan::Suffix::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 699 | result = pos; BUILDSTDERR: | ~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 103 | struct VertexSA : public VertexEsa BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:3: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' BUILDSTDERR: 290 | VertexEsa(VertexEsa const &other): BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >*>, seqan::InfixSegment>; TTargetSpec = seqan::Array<4>; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::TagLimit_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10: required from 'void seqan::goNextImpl(seqan::Iter > > >&, seqan::VSTreeIteratorTraits) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13: required from 'void seqan::goNext(seqan::Iter >&, TTraits) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >; TTraits = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9: required from 'void seqan::goNext(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >*>, seqan::InfixSegment>; TTargetSpec = seqan::Array<4>; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::TagLimit_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:50: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::Range >*>; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 350 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::Range >*>; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(seqan::Pipe&, TValue&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>; TSpec = seqan::Counter; TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>, seqan::Counter>; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | Ref_ = *me; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(seqan::Handler::TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:13: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:9: required from 'void seqan::pop(seqan::Pool&, TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 926 | Ref_ = *cur; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:9: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here BUILDSTDERR: 144 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here BUILDSTDERR: 147 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here BUILDSTDERR: 151 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here BUILDSTDERR: 154 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here BUILDSTDERR: 158 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/parallel/compiletime_settings.h:33, BUILDSTDERR: from /usr/include/c++/9/parallel/parallel.h:37, BUILDSTDERR: from /usr/include/c++/9/parallel/base.h:40, BUILDSTDERR: from /usr/include/c++/9/parallel/algobase.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/stl_algobase.h:1459, BUILDSTDERR: from /usr/include/c++/9/bits/char_traits.h:39, BUILDSTDERR: from /usr/include/c++/9/ios:40, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew7NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple, seqan::Tag >, seqan::_skew3ExtendComp, seqan::Tuple, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17, BUILDSTDERR: inlined from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew3>; TFunctor = seqan::_skew3UnslicerFunc]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew3>, seqan::Filter > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew3>, seqan::Filter > >, seqan::Counter>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew3>, seqan::Filter > >, seqan::Counter>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew3>, seqan::Filter > >, seqan::Counter>]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew3NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ NA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp [ 4%] Linking CXX executable ../../../bin/fiona_illumina cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../../bin/fiona_illumina -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Built target fiona_illumina make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= Scanning dependencies of target fiona make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 6%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gccIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4212 | if (options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4215 | Dna5String tmp; BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4235 | if (options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4238 | double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4413 | if (options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4416 | if (options.errorrate != 0 && options.wovsum != 0) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4684 | for (unsigned i = 0; i < length(store.readSeqStore); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 4689 | TFionaQgramIndex qgramIndex(prefixes); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 4852 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 4854 | if (inTerm && options.verbosity >= 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5027 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5032 | resize(store.readSeqStore, readCount); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5479 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5483 | bool autoCycles = (options.cycles == 0 || options.cycles == 1000); BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5495 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5497 | if (!loadReadsNoNames(store, options.inputFilename, options)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5561 | if (options.verbosity >= 1) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5563 | options.autolevel = (options.fromLevel <= 1); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 5671 | if (res != 0) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 5674 | if (options.verbosity >= 1 && options.cycles > 1) BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, seqan::Tag) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<10> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TWithConstraints = seqan::True; TStepSize = long unsigned int; TParallelTag = seqan::Parallel_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 438 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 445 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 472 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const seqan::Pair&, const seqan::String&) [with TResult = seqan::Pair >; TSize = long unsigned int; TSpec = seqan::Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16: required from 'typename seqan::Suffix::Type seqan::suffix(seqan::StringSet&, const TPosition&) [with TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPosition = seqan::Pair >; typename seqan::Suffix::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 699 | result = pos; BUILDSTDERR: | ~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 103 | struct VertexSA : public VertexEsa BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:3: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' BUILDSTDERR: 290 | VertexEsa(VertexEsa const &other): BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >*>, seqan::InfixSegment>; TTargetSpec = seqan::Array<4>; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::TagLimit_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10: required from 'void seqan::goNextImpl(seqan::Iter > > >&, seqan::VSTreeIteratorTraits) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder; THideEmptyEdges = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13: required from 'void seqan::goNext(seqan::Iter >&, TTraits) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >; TTraits = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9: required from 'void seqan::goNext(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >*>, seqan::InfixSegment>; TTargetSpec = seqan::Array<4>; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::TagLimit_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:50: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::Range >*>; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 350 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::Range >*>; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(seqan::Pipe&, TValue&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>; TSpec = seqan::Counter; TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>, seqan::Counter>; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | Ref_ = *me; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::Range >*>; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::Range >*>; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(seqan::Handler::TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:13: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:9: required from 'void seqan::pop(seqan::Pool&, TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 926 | Ref_ = *cur; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(seqan::Range&, seqan::Pipe&) [with TIterator = seqan::Pair >*; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:9: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here BUILDSTDERR: 144 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here BUILDSTDERR: 147 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here BUILDSTDERR: 151 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here BUILDSTDERR: 154 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here BUILDSTDERR: 158 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/parallel/compiletime_settings.h:33, BUILDSTDERR: from /usr/include/c++/9/parallel/parallel.h:37, BUILDSTDERR: from /usr/include/c++/9/parallel/base.h:40, BUILDSTDERR: from /usr/include/c++/9/parallel/algobase.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/stl_algobase.h:1459, BUILDSTDERR: from /usr/include/c++/9/bits/char_traits.h:39, BUILDSTDERR: from /usr/include/c++/9/ios:40, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew7NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew3NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::String >; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(seqan::Gaps&, TPosition) [with TSequence = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >; TPosition = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TScore = seqan::Score >; TShrinkMatches = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1565:36: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19: required from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:478:12: required from 'int writeRandomSequence(TRNG&, size_t, const CharString&, const TOptions&) [with TRNG = seqan::Rng; TOptions = Options >; size_t = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:568:38: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1385:31: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11: required from 'void seqan::insert(seqan::String >&, TPos, const TString&) [with TValue = seqan::SimpleType; THostSpec = seqan::Alloc<>; TJournalSpec = seqan::SortedArray; TBufferSpec = seqan::Alloc<>; TString = seqan::String >; TPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:65: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19: required from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1008:12: required from 'void buildHaplotype(seqan::StringSet, seqan::Journaled > > >&, seqan::FragmentStore&, seqan::String >&, TRNG&, const Options&) [with TRNG = seqan::Rng]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1322:27: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11: required from 'void seqan::insert(seqan::String >&, TPos, const TString&) [with TValue = seqan::SimpleType; THostSpec = seqan::Alloc<>; TJournalSpec = seqan::SortedArray; TBufferSpec = seqan::Alloc<>; TString = seqan::String >; TPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:65: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/stl_construct.h:59, BUILDSTDERR: from /usr/include/c++/9/bits/stl_tempbuf.h:60, BUILDSTDERR: from /usr/include/c++/9/bits/stl_algo.h:62, BUILDSTDERR: from /usr/include/c++/9/algorithm:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:39: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/stl_construct.h:59, BUILDSTDERR: from /usr/include/c++/9/bits/stl_tempbuf.h:60, BUILDSTDERR: from /usr/include/c++/9/bits/stl_algo.h:62, BUILDSTDERR: from /usr/include/c++/9/algorithm:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/stl_construct.h:59, BUILDSTDERR: from /usr/include/c++/9/bits/stl_tempbuf.h:60, BUILDSTDERR: from /usr/include/c++/9/bits/stl_algo.h:62, BUILDSTDERR: from /usr/include/c++/9/algorithm:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = ReadSimulationInstruction >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551408' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/stl_construct.h:59, BUILDSTDERR: from /usr/include/c++/9/bits/stl_tempbuf.h:60, BUILDSTDERR: from /usr/include/c++/9/bits/stl_algo.h:62, BUILDSTDERR: from /usr/include/c++/9/algorithm:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ -switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp [ 6%] Linking CXX executable ../../../bin/fiona cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../../bin/fiona -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 6%] Built target fiona make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= Scanning dependencies of target mason make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp [ 8%] Linking CXX executable ../../../bin/mason cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -WIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, seqan::Nothing, TWithConstraints, TValue, seqan::MicroRNA) [with TSA = seqan::String >, seqan::Alloc<> >; TStringSet = seqan::StringSet >, seqan::Owner > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TValue = unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, seqan::MicroRNA) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:43: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:45: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, seqan::Nothing, TWithConstraints, TValue, seqan::MicroRNA) [with TSA = seqan::String >, seqan::Alloc<> >; TStringSet = seqan::StringSet >, seqan::Owner > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TValue = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, seqan::MicroRNA) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:43: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:45: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, const TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobalHamming) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobalHamming = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1378:21: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1378 | return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA()); BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:33: note: initializing argument 2 of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, const seqan::RazerSOptions&, seqan::MicroRNA) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: 1276 | Segment inf, // potential match genome region BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, seqan::Nothing, TWithConstraints, TValue, seqan::MicroRNA) [with TSA = seqan::String >, seqan::Alloc<> >; TStringSet = seqan::StringSet >, seqan::Owner > >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TValue = unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, seqan::MicroRNA) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:43: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:45: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, seqan::Nothing, TWithConstraints, TValue, seqan::MicroRNA) [with TSA = seqan::String >, seqan::Alloc<> >; TStringSet = seqan::StringSet >, seqan::Owner > >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TValue = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, seqan::MicroRNA) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:43: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:45: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, seqan::Nothing, TWithConstraints, TValue, seqan::MicroRNA) [with TSA = seqan::String >, seqan::Alloc<> >; TStringSet = seqan::StringSet >, seqan::Owner > >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TValue = unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, seqan::MicroRNA) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:43: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:45: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, seqan::Nothing, TWithConstraints, TValue, seqan::MicroRNA) [with TSA = seqan::String >, seqan::Alloc<> >; TStringSet = seqan::StringSet >, seqan::Owner > >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TValue = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, seqan::MicroRNA) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:43: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:40: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:45: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:19: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1490 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:570:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:444:28: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1491:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1474:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1492:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:612:44: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void; typename seqan::Parameter_::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1497:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 294 | TContainer cont(container(host(me))); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String >; TSize = int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason.dir/mason.cpp.o -o ../../../bin/mason -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Built target mason make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= Scanning dependencies of target micro_razers make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp [ 9%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp [ 9%] Linking CXX executable ../../../bin/micro_razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const seqan::Graph >&, TMatrix&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TMatrix = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const seqan::Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = seqan::Alignment, seqan::Alloc<> >, seqan::Dependent > >, void, const seqan::Tag >; TNames = seqan::StringSet > >; seqan::FastaFormat = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:262:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const seqan::Graph >&, TMatrix&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TMatrix = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const seqan::Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = seqan::Alignment, seqan::Alloc<> >, seqan::Dependent > >, void, const seqan::Tag >; TNames = seqan::StringSet > >; seqan::FastaFormat = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:298:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const seqan::Graph >&, TMatrix&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TMatrix = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const seqan::Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = seqan::Alignment, seqan::Alloc<> >, seqan::Dependent > >, void, const seqan::Tag >; TNames = seqan::StringSet > >; seqan::FastaFormat = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:316:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String > >; TValue = seqan::String >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::String >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: BUILDSTDERR: /usr/include/c++/9/new: In member function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../../bin/micro_razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 9%] Built target micro_razers make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp [ 11%] Linking CXX executable ../../../bin/pair_align cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:79: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:118: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:23:31: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(seqan::Pattern >&, const TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:113:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 624 | return ModifiedString(host); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(seqan::Pattern >&, const TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:113:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:2: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -static-libstdc++ -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../../bin/pair_align -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target pair_align make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_do_search make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp [ 11%] Linking CXX executable ../../../bin/rabema_do_search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../../bin/rabema_do_search -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target rabema_do_search make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUIIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const seqan::Graph&, const TPropertyMap&, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15: required from 'void seqan::findIntervals(const seqan::IntervalTree&, TValue, seqan::String&) [with TValue = unsigned int; TCargo = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:635:22: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1403:105: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:12: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1827 | act_prop = property(pm,act_knot); BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:15: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1838 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:16: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1859 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1311:65: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(seqan::Pattern >&, const TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:113:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1403:105: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 624 | return ModifiedString(host); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(seqan::Pattern >&, const TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:113:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1403:105: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_evaluate make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp [ 12%] Linking CXX executable ../../../bin/rabema_evaluate cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../../bin/rabema_evaluate -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Built target rabema_evaluate make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_prepare_sam make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:120:16: required from 'seqan::String >::String(seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:80:29: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp [ 14%] Linking CXX executable ../../../bin/rabema_prepare_sam cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../../bin/rabema_prepare_sam -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Built target rabema_prepare_sam make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_build_gold_standard make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:79: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:118: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(seqan::Pattern >&, const TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:113:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1253:101: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 624 | return ModifiedString(host); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(seqan::Pattern >&, const TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:113:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1253:101: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(seqan::String&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(seqan::String&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:869:29: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1253:101: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:548:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 548 | else if (endsWith(tmp, ".gff")) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:551:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 551 | if (isSet(parser, "shape")) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 585 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 587 | if ((options.minClippedLen < 0) && (stop = true)) BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1490 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1490 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:376:29: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:211:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1491:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1474:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1492:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31: required from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42: required from 'void seqan::assign(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11: required from 'void seqan::assign(seqan::String&, const TSource&) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15: required from 'seqan::String >& seqan::String >::operator=(const TSource&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:918:13: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeNames = seqan::StringSet > >; TReads = seqan::StringSet >, seqan::Owner > >; TReadNames = seqan::StringSet > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:241:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void; typename seqan::Parameter_::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1497:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 294 | TContainer cont(container(host(me))); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String >; TSize = int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:268:28: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp [ 16%] Linking CXX executable ../../../bin/rabema_build_gold_standard cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../../bin/rabema_build_gold_standard -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_build_gold_standard make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= Scanning dependencies of target razers make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp [ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:492:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 492 | if (!isSet(parser, "read-naming") && options.outputFormat == 4) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:495:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 495 | if (isSet(parser, "shape")) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:529:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 529 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 532 | options.errorRate = (100.0 - options.errorRate) / 100.0; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1000 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1068 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1128 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::Myers > >, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1000 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1068 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1128 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1000 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1068 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1128 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::Myers > >, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1000 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1068 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1128 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1000 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1068 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1128 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::Myers > >, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1000 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1068 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1128 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:376:29: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>; TSource = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_dequeue.h:344:8: required from 'void seqan::pushBack(seqan::Dequeue&, const TValue&) [with TValue = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>& seqan::Triple, void>, seqan::AlignQualityStoreElement, void>::operator=(const seqan::Triple, void>, seqan::AlignQualityStoreElement, void>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement, void>; T3 = seqan::AlignQualityStoreElement; TSpec = void]' BUILDSTDERR: 162 | inline Triple(Triple const & _p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:201:9: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1049:21: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::String >; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(seqan::Gaps&, TPosition) [with TSequence = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >; TPosition = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TScore = seqan::Score >; TShrinkMatches = seqan::False]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1053:48: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1015:13: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1069:22: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:481:44: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void; typename seqan::Parameter_::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1073:16: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, TReadSet&, seqan::SwiftSemiGlobal) [with TMatchVerifier = seqan::MatchVerifier, seqan::RazerSOptions<>, seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > > >; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 294 | TContainer cont(container(host(me))); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String >; TSize = int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = seqan::FragmentStore<>; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::Myers > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23: required from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Segment >, seqan::InfixSegment>*; TSource1 = seqan::Segment >, seqan::InfixSegment>*; TSource2 = seqan::Segment >, seqan::InfixSegment>*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::False) [with TValueSource = seqan::Segment >, seqan::InfixSegment>; TValueTarget = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::Segment >, seqan::InfixSegment>; TValueTarget = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:1435:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TSize = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:731:8: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:268:28: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>; TSource = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>; TSource = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>*; TSource1 = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>*; TSource2 = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>*; TSource1 = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>*; TSource2 = seqan::Triple, void>, seqan::AlignQualityStoreElement, void>*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14: required from 'void seqan::mapMatePairReads(seqan::FragmentStore&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TPreprocessing = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(seqan::FragmentStore&, seqan::StringSet > >&, seqan::String&, seqan::RazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TGNoToFile = seqan::Pair >, unsigned int>; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>& seqan::Triple, void>, seqan::AlignQualityStoreElement, void>::operator=(const seqan::Triple, void>, seqan::AlignQualityStoreElement, void>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement, void>; T3 = seqan::AlignQualityStoreElement; TSpec = void]' BUILDSTDERR: 162 | inline Triple(Triple const & _p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp [ 19%] Linking CXX executable ../../../bin/razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../../bin/razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Built target razers make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= Scanning dependencies of target razers2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp [ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp [ 20%] Linking CXX executable ../../../bin/razers2 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o -o ../../../bin/razers2 -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 20%] Built target razers2 make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= Scanning dependencies of target sak make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switchIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:503:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:525:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:503:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:525:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:503:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:525:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:503:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = seqan::String >; TQualString = seqan::Segment >, seqan::InfixSegment>; TSeqString = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:525:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:492:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:13: required from 'int seqan::readRecord(TId&, TSequence&, seqan::SequenceStream&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:155:42: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/ext/new_allocator.h:33, BUILDSTDERR: from /usr/include/c++/9/riscv64-redhat-linux/bits/c++allocator.h:33, BUILDSTDERR: from /usr/include/c++/9/bits/allocator.h:46, BUILDSTDERR: from /usr/include/c++/9/bits/stl_tree.h:64, BUILDSTDERR: from /usr/include/c++/9/map:60, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/stdexcept:39, BUILDSTDERR: from /usr/include/c++/9/array:39, BUILDSTDERR: from /usr/include/c++/9/tuple:39, BUILDSTDERR: from /usr/include/c++/9/bits/stl_map.h:63, BUILDSTDERR: from /usr/include/c++/9/map:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ es -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp [ 22%] Linking CXX executable ../../../bin/sak cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../../bin/sak -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Built target sak make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= Scanning dependencies of target sam2matrix make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp [ 24%] Linking CXX executable ../../../bin/sam2matrix cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../../bin/sam2matrix -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Built target sam2matrix make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= Scanning dependencies of target samcat make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp [ 25%] Linking CXX executable ../../../bin/samcat cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../../bin/samcat -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target samcat make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend BUILDSTDERR: make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 148 | for (unsigned i = 0; i < length(mat); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 152 | String<__int64> av; // Average branch length to a combined node BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 416 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 420 | TString seq; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 534 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 538 | String mat; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 878 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 880 | TName seq1; BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 985 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 988 | TVertexDescriptor lastVertex = nilVertex; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(const seqan::Graph&, const TPropertyMap&, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > > > >; TValue = long unsigned int; TCargo = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34: required from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >; TAnnotation = bool; TOutGraph = seqan::Graph, seqan::Alloc<> >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Dependent >; TScore = long unsigned int; TTagSpec = seqan::TagExactRefinement_; typename seqan::Size::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17: required from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >; TOutGraph = seqan::Graph, seqan::Alloc<> >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Dependent >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:229:17: required from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>; TSpec1 = seqan::Alloc<>; TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; seqan::FrequencyCounting = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:115:21: required from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:12: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2068 | act_prop = property(pm,act_knot); BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:15: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2079 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:16: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2100 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const seqan::Graph >&, TMatrix&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; TMatrix = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const seqan::Graph >&, TMatrix&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; TMatrix = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:302:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const seqan::Graph >&, TMatrix&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; TMatrix = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:322:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_tcoffee make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp [ 25%] Linking CXX executable ../../../bin/seqan_tcoffee cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../../bin/seqan_tcoffee -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target seqan_tcoffee make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= Scanning dependencies of target seqcons make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: [ 27%] BuildiIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 148 | for (unsigned i = 0; i < length(mat); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 152 | String<__int64> av; // Average branch length to a combined node BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 416 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 420 | TString seq; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 534 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 538 | String mat; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 878 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 880 | TName seq1; BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 985 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 988 | TVertexDescriptor lastVertex = nilVertex; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore&, TGappedConsensus&, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 389 | diff = (itGaps->gapPos - itGaps->seqPos); BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'seqan::ArgumentParser::ParseResult parseCommandLine(seqan::ConsensusOptions&, int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:94:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 94 | if (res != seqan::ArgumentParser::PARSE_OK) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:98:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 98 | getOptionValue(consOpt.readsfile, parser, "reads"); BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'int main(int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:240:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 240 | if (res != seqan::ArgumentParser::PARSE_OK) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 244 | typedef FragmentStore<> TFragmentStore; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(const seqan::Graph&, const TPropertyMap&, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > > > >; TValue = long unsigned int; TCargo = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34: required from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >; TAnnotation = bool; TOutGraph = seqan::Graph >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String >; TSetSpec = seqan::Dependent >; TScore = long unsigned int; TTagSpec = seqan::TagExactRefinement_; typename seqan::Size::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17: required from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >; TOutGraph = seqan::Graph >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String >; TSetSpec = seqan::Dependent >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:182:17: required from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>; TSpec1 = seqan::Alloc<>; TScoreValue = int; TSpec2 = seqan::Alloc<>; TStringSet = seqan::StringSet >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; seqan::FractionalScore = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:311:21: required from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, const TScore&, ReScore) [with TFragment = seqan::Fragment<>; TSpec1 = seqan::Alloc<>; TScoreValue = int; TSpec2 = seqan::Alloc<>; TStringSet = seqan::StringSet >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; TScore = seqan::Score >; seqan::ReScore = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:564:21: required from 'void seqan::consensusAlignment(seqan::Graph >&, seqan::String >&, const TConfigOptions&) [with TStringSet = seqan::StringSet >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TSize = long unsigned int; TConfigOptions = seqan::ConsensusOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:278:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:12: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2068 | act_prop = property(pm,act_knot); BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:15: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2079 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:16: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2100 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:60: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_realign.h:776:15: required from 'void seqan::reAlign(seqan::FragmentStore&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TScore = seqan::Score >, seqan::Score > > >; TId = long unsigned int; TMethod = int; TBandwidth = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:263:105: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = seqan::String >; TGaps1 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGaps2 = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const seqan::Nothing&) [with TCigar = seqan::String >; TMDString = seqan::String >; TContig = seqan::ContigStoreElement >, seqan::GapAnchor, void>; TReadSeq = seqan::String >; TErrors = int; TAlignedRead = seqan::AlignedReadStoreElement, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::Nothing; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, seqan::FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14: required from 'int seqan::_convertSimpleReadFile(TFile&, seqan::FragmentStore&, TFilePath&, bool) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TFilePath = const std::__cxx11::basic_string]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:60: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:60: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment >, seqan::InfixSegment>; TValue2 = const seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment >, seqan::InfixSegment>; TSource = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:60: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14: required from 'int seqan::_convertSimpleReadFile(TFile&, seqan::FragmentStore&, TFilePath&, bool) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TFilePath = const std::__cxx11::basic_string]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:60: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 534 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here BUILDSTDERR: 535 | case 'I': BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 534 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here BUILDSTDERR: 535 | case 'I': BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 564 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here BUILDSTDERR: 565 | case 'D': BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ng CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp [ 27%] Linking CXX executable ../../../bin/seqcons cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqcons.dir/seqcons.cpp.o -o ../../../bin/seqcons -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Built target seqcons make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= Scanning dependencies of target snp_store make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexcepIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:32: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 148 | for (unsigned i = 0; i < length(mat); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 152 | String<__int64> av; // Average branch length to a combined node BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 416 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 420 | TString seq; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 534 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 538 | String mat; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 878 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 880 | TName seq1; BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 985 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 988 | TVertexDescriptor lastVertex = nilVertex; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore&, TGappedConsensus&, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 389 | diff = (itGaps->gapPos - itGaps->seqPos); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h: In instantiation of 'seqan::Pair::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment >, seqan::InfixSegment>; TSpec = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:5235:46: required from 'void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TGenome = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:997:74: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:36: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h:143:59: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {} BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4144:36: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCounts = seqan::String >; TReadCigars = seqan::StringSet > >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TReadCounts = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:36: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1200:28: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1178:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(const T&, TPos) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:450:22: required from 'bool seqan::isGap(const seqan::Gaps >&, TPosition) [with TSequence = seqan::String >; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4505:72: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCounts = seqan::String >; TReadCigars = seqan::StringSet > >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TReadCounts = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:36: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/tokenize.h:943:12: required from 'int seqan::readNChars(TBuffer&, seqan::RecordReader&, unsigned int) [with TBuffer = seqan::String >; TStream = std::basic_fstream; TPass = seqan::SinglePass]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1004:39: required from 'int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, seqan::String >&, seqan::StringSet&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream*; TFragmentStore = seqan::FragmentStore; TReadCounts = seqan::String >; TCigarStr = seqan::String >; TGenome = seqan::String >; TGenomeIdMap = std::map >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = seqan::SNPCallingOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:903:54: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:36: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4809:28: required from 'void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TReadCounts = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1014:38: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:36: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 198 | if (skipWhitespaces(reader) != 0) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 201 | int kickout = 0; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 373 | if (pm_options.verbose) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:376:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 376 | resize(avg,pm_options.totalN,(TFloat)0.0); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(seqan::RazerSOptions&, TFile&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 934 | if (value(reader) == 'e') BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:938:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 938 | bool atLeastOneFound = false; BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp: In function 'int main(int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:564:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 564 | for (unsigned i = 0; i < length(readFileNames); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:567:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 567 | if(length(readFileNames) == 2) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:615:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 615 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 617 | if ((options.minClippedLen < 0) && (stop = true)) BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = seqan::Segment >, seqan::InfixSegment>; typename seqan::ReverseComplementString::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeNames = seqan::StringSet > >; TReads = seqan::StringSet >, seqan::Owner > >; TReadRegions = seqan::String > > >; TReadNames = seqan::StringSet > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:45: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 161 | _host(std::forward(host)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 165 | ModifiedString(typename Parameter_::Type host): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestSuffix; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 684 | TGenomeInfix oriInf = inf; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 692 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestPrefix; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2618:20: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 684 | TGenomeInfix oriInf = inf; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 692 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1466 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2036:19: required from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2183:24: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1466 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:45: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = seqan::Segment >, seqan::InfixSegment>; typename seqan::ReverseComplementString::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeNames = seqan::StringSet > >; TReads = seqan::StringSet >, seqan::Owner > >; TReadRegions = seqan::String > > >; TReadNames = seqan::StringSet > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:376:29: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:376:29: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:516:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestSuffix; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(const seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:537:26: required from 'void seqan::setHost(seqan::ModifiedString&, const THost&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:696:10: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestSuffix; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:477:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 477 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3101:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3103:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2256:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2259:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, seqan::True) [with TTarget = std::basic_ofstream; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, seqan::Raw) [with TFile = std::basic_ofstream; TData = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TString = char [1]; seqan::Raw = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ofstream; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeNames = seqan::StringSet > >; TReads = seqan::StringSet >, seqan::Owner > >; TReadRegions = seqan::String > > >; TReadNames = seqan::StringSet > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; typename seqan::Parameter_::Type>::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const seqan::Finder >&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >; typename seqan::Position > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25: required from 'seqan::Pair > >::Type> seqan::positionRange(seqan::Finder >&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >; typename seqan::Position > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 801 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; typename seqan::Parameter_::Type>::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const seqan::Finder >&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >; typename seqan::Position > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25: required from 'seqan::Pair > >::Type> seqan::positionRange(seqan::Finder >&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >; typename seqan::Position > >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 801 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2410:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:670:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestSuffix; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:693:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestSuffix; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:1735:14: required from 'bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, seqan::RazerSOptions&, char, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TRead = const seqan::Segment >, seqan::InfixSegment>; TGenome = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1450:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1468:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31: required from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42: required from 'void seqan::assign(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11: required from 'void seqan::assign(seqan::String&, const TSource&) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15: required from 'seqan::String >& seqan::String >::operator=(const TSource&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1102:13: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeNames = seqan::StringSet > >; TReads = seqan::StringSet >, seqan::Owner > >; TReadRegions = seqan::String > > >; TReadNames = seqan::StringSet > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void; typename seqan::Parameter_::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:704:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestSuffix; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 294 | TContainer cont(container(host(me))); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void; typename seqan::Parameter_::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1473:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 294 | TContainer cont(container(host(me))); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(seqan::ModifiedString&, seqan::Tag) [with THost = const seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::ModView > >; TTagSpec = seqan::Rooted_; typename seqan::Iterator, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:185:61: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, seqan::True) [with TTarget = std::basic_ofstream; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, seqan::Raw) [with TFile = std::basic_ofstream; TData = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TString = char [1]; seqan::Raw = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ofstream; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeNames = seqan::StringSet > >; TReads = seqan::StringSet >, seqan::Owner > >; TReadRegions = seqan::String > > >; TReadNames = seqan::StringSet > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:626:22: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString&, seqan::Tag) [with THost = const seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::ModView > >; TTagSpec = seqan::Rooted_; typename seqan::Iterator, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:497:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:186:63: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, seqan::True) [with TTarget = std::basic_ofstream; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, seqan::Raw) [with TFile = std::basic_ofstream; TData = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TString = char [1]; seqan::Raw = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ofstream; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeNames = seqan::StringSet > >; TReads = seqan::StringSet >, seqan::Owner > >; TReadRegions = seqan::String > > >; TReadNames = seqan::StringSet > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TNameSet = seqan::StringSet > >; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String >; TSize = int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:268:28: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:41: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String >; TOriReadSet = seqan::StringSet >, seqan::Owner > >; TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >; TReadSet_ = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape, seqan::UngappedShape<0> >; TShapeR = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp [ 29%] Linking CXX executable ../../../bin/snp_store cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../../bin/snp_store -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target snp_store make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= Scanning dependencies of target splazers make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp [ 29%] Linking CXX executable ../../../bin/splazers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 199 | TAlign ali(align); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 199 | TAlign ali(align); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 199 | TAlign ali(align); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 199 | TAlign ali(align); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 199 | TAlign ali(align); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 199 | TAlign ali(align); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 444 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 444 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 444 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 444 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 444 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Dependent >; TShape = seqan::Shape >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Dependent >; TShape = seqan::Shape >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 444 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSource = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TValue2 = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Host >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Needle >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(seqan::Align&, const seqan::Align::Type, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSource = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TValue2 = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Host >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Needle >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(seqan::Align&, const seqan::Align::Type, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSource = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TValue2 = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Host >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Needle >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(seqan::Align&, const seqan::Align::Type, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSource = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TValue2 = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Host >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Needle >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(seqan::Align&, const seqan::Align::Type, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSource = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TValue2 = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Host >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Needle >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(seqan::Align&, const seqan::Align::Type, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSource = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Host >::Type = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Needle >::Type = seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment >, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(seqan::Align&, const seqan::Align::Type, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String >; TSize = int; TEps = double; TAlign = seqan::Align >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TValue2 = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String >; TSeed = seqan::Seed >; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 686 | return Iter >(container(left), hostIterator(left) - right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 686 | return Iter >(container(left), hostIterator(left) - right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 686 | return Iter >(container(left), hostIterator(left) - right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 686 | return Iter >(container(left), hostIterator(left) - right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 686 | return Iter >(container(left), hostIterator(left) - right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 686 | return Iter >(container(left), hostIterator(left) - right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; TIntegral = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Triple; TSource = seqan::Triple]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = seqan::Triple; TSource = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple*; TSource1 = seqan::Triple*; TSource2 = seqan::Triple*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple*; TSource1 = seqan::Triple*; TSource2 = seqan::Triple*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]' BUILDSTDERR: 162 | inline Triple(Triple const & _p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: BUILDSTDERR: /usr/include/c++/9/new: In function 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../../bin/splazers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target splazers make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= Scanning dependencies of target stellar make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp [ 30%] Linking CXX executable ../../../bin/stellar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../../bin/stellar -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Built target stellar make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: cd /buildIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 148 | for (unsigned i = 0; i < length(mat); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 152 | String<__int64> av; // Average branch length to a combined node BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 416 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 420 | TString seq; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 534 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 538 | String mat; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 878 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 880 | TName seq1; BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 985 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 988 | TVertexDescriptor lastVertex = nilVertex; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp: In function 'int main(int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:139:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 139 | if (res != seqan::ArgumentParser::PARSE_OK) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 143 | typedef double TDistanceValue; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:165:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 165 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:169:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 169 | String names; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ dir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= Scanning dependencies of target tree_recon make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp [ 32%] Linking CXX executable ../../../bin/tree_recon cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../../bin/tree_recon -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target tree_recon make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_extras make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'. BUILDSTDERR: make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/ReleasIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11: required from 'seqan::String& seqan::operator+=(seqan::String&, const TRight&) [with TLeftValue = seqan::SimpleType; TLeftSpec = seqan::Alloc<>; TRight = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_base.h:1051:9: required from 'void seqan::unhash(TString&, THash, unsigned int) [with TString = seqan::String, seqan::Alloc<> >; THash = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:60:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TString2 = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:181:63: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexQGram >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexQGram >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15: required from 'void seqan::MarkovModel::build(const seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:2: required from 'void seqan::buildMarkovModel(seqan::MarkovModel&, seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21: required from 'void seqan::countKmers(seqan::String >&, seqan::MarkovModel&, const TString&, unsigned int) [with TString = seqan::String, seqan::Alloc<> >; TAlphabetBG = seqan::SimpleType; TValue = double]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23: required from 'void seqan::_alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const seqan::AFScore >&) [with TStringSet = seqan::StringSet, seqan::Alloc<> > >; TValue = double]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = seqan::StringSet, seqan::Alloc<> > >; TValue = double; TComparisonMethod = seqan::AFScore >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexQGram > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexQGram >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexQGram >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15: required from 'void seqan::MarkovModel::build(const seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:2: required from 'void seqan::buildMarkovModel(seqan::MarkovModel&, seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21: required from 'void seqan::countKmers(seqan::String >&, seqan::MarkovModel&, const TString&, unsigned int) [with TString = seqan::String, seqan::Alloc<> >; TAlphabetBG = seqan::SimpleType; TValue = double]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23: required from 'void seqan::_alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const seqan::AFScore >&) [with TStringSet = seqan::StringSet, seqan::Alloc<> > >; TValue = double]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = seqan::StringSet, seqan::Alloc<> > >; TValue = double; TComparisonMethod = seqan::AFScore >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11: required from 'seqan::String& seqan::operator+=(seqan::String&, const TRight&) [with TLeftValue = seqan::SimpleType; TLeftSpec = seqan::Alloc<>; TRight = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15: required from 'void seqan::calculateCovariance(TValue&, const seqan::String&, const seqan::String&, seqan::MarkovModel&, int) [with TValue = double; TSpec = seqan::Alloc<>; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48: required from 'void seqan::_standardiseCounts(TString&, const seqan::String >&, const seqan::StringSet > >&, const TSequence&, const seqan::AFScore >&) [with TString = seqan::String; TSequence = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27: required from 'void seqan::_alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const seqan::AFScore >&) [with TValue = double; TStringSet = seqan::StringSet, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = seqan::StringSet, seqan::Alloc<> > >; TValue = double; TComparisonMethod = seqan::AFScore >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:67: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15: required from 'void seqan::calculateCovariance(TValue&, const seqan::String&, const seqan::String&, seqan::MarkovModel&, int) [with TValue = double; TSpec = seqan::Alloc<>; TAlphabet = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48: required from 'void seqan::_standardiseCounts(TString&, const seqan::String >&, const seqan::StringSet > >&, const TSequence&, const seqan::AFScore >&) [with TString = seqan::String; TSequence = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27: required from 'void seqan::_alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const seqan::AFScore >&) [with TValue = double; TStringSet = seqan::StringSet, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(seqan::Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = seqan::StringSet, seqan::Alloc<> > >; TValue = double; TComparisonMethod = seqan::AFScore >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:67: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:42: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ e' [ 32%] Built target seqan_extras make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= Scanning dependencies of target alf make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp [ 32%] Linking CXX executable ../../../bin/alf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../../bin/alf -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target alf make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= Scanning dependencies of target breakpoint_calculator make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: make -f extras/apps/breakpoint_cIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ alculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp [ 32%] Linking CXX executable ../../../bin/breakpoint_calculator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -o ../../../bin/breakpoint_calculator -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target breakpoint_calculator make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= Scanning dependencies of target casbar make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/builIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 148 | for (unsigned i = 0; i < length(mat); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 152 | String<__int64> av; // Average branch length to a combined node BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 416 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 420 | TString seq; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 534 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 538 | String mat; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 878 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 880 | TName seq1; BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 985 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 988 | TVertexDescriptor lastVertex = nilVertex; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore&, TGappedConsensus&, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 389 | diff = (itGaps->gapPos - itGaps->seqPos); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/../../extras/include/seqan/vcf_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:64: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 190 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 192 | streamWriteChar(stream, '\t'); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1387:36: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const seqan::Gaps&) [with TStream = std::basic_ostream; TSource = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const seqan::Gaps&) [with TStream = std::basic_ostream; TSource = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const seqan::Gaps&) [with TStream = std::basic_ostream; TSource = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const seqan::Gaps&, const TIDString&, seqan::Raw) [with TFile = std::basic_ostream; TSource = seqan::String >; TIDString = char [1]; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >; seqan::Raw = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const seqan::Gaps&, const TIDString&, seqan::Raw) [with TFile = std::basic_ostream; TSource = seqan::String >; TIDString = char [1]; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >; seqan::Raw = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:343:54: required from 'void seqan::_printRead(seqan::SVGFile&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = seqan::SVGFile; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const seqan::Gaps&, const TIDString&, seqan::Raw) [with TFile = std::basic_ostream; TSource = seqan::String >; TIDString = char [1]; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >; seqan::Raw = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(seqan::SVGFile&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = seqan::SVGFile; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(seqan::SVGFile&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = seqan::SVGFile; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(seqan::SVGFile&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = seqan::SVGFile; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(seqan::SVGFile&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = seqan::SVGFile; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:680:15: required from 'int readMatchesFromSamBam(TSetContigAnchorGaps&, TReader&, seqan::BamIOContext&, seqan::BamAlignmentRecord&, TFragmentStore&, TFragmentStore&, TContigId, TContigPos, TContigPos, TOptions&) [with TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TReader = seqan::RecordReader, seqan::SinglePass >; TNameStore = seqan::StringSet > >; TFragmentStore = seqan::FragmentStore; TContigId = int; TContigPos = long int; TOptions = SNPCallingOptions; typename seqan::Value::Type = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:697:47: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(seqan::SVGFile&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = seqan::SVGFile; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(seqan::SVGFile&, const seqan::Tag&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = seqan::TagRaw_; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const seqan::Tag&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = seqan::SVGFile; TFormatTag = seqan::TagRaw_; TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 534 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here BUILDSTDERR: 535 | case 'I': BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 564 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here BUILDSTDERR: 565 | case 'D': BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:6, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score >&, const TString&, TMethOptions&, seqan::BsTop&) [with TValue = double; TString = seqan::String, double> >; TBsProfileScore = const seqan::Tag; TModel = seqan::Tag; TCellDescriptor = seqan::Tag; TMethOptions = MethCallingOptions]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:17: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 190 | me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0; // T BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here BUILDSTDERR: 191 | case -1: // Ref gap BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score >&, const TString&, TMethOptions&, seqan::BsTop&) [with TValue = double; TString = seqan::String, double> >; TBsProfileScore = const seqan::Tag; TModel = seqan::Tag; TCellDescriptor = seqan::Tag; TMethOptions = MethCallingOptions]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:17: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 190 | me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0; // T BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here BUILDSTDERR: 191 | case -1: // Ref gap BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score >&, const TString&, TMethOptions&, seqan::BsBottom&) [with TValue = double; TString = seqan::String, double> >; TBsProfileScore = const seqan::Tag; TModel = seqan::Tag; TCellDescriptor = seqan::Tag; TMethOptions = MethCallingOptions]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:17: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 265 | me.targetFreqs[i][3] += (1.0/sum)/4.0; // T BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here BUILDSTDERR: 266 | case -1: // Ref gap BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score >&, const TString&, TMethOptions&, seqan::BsBottom&) [with TValue = double; TString = seqan::String, double> >; TBsProfileScore = const seqan::Tag; TModel = seqan::Tag; TCellDescriptor = seqan::Tag; TMethOptions = MethCallingOptions]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:17: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 265 | me.targetFreqs[i][3] += (1.0/sum)/4.0; // T BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here BUILDSTDERR: 266 | case -1: // Ref gap BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = long double; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = long double; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22, BUILDSTDERR: inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, BUILDSTDERR: inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ d/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp [ 33%] Linking CXX executable ../../../bin/casbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../../bin/casbar -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Built target casbar make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= Scanning dependencies of target four2three make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstaIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:36: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const seqan::Gaps&) [with TStream = std::basic_ostream; TSource = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 211 | return TProxy(it); BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: 99 | Proxy(TIterator const _it) BUILDSTDERR: | ~~~~~~~~~~~~~~~~^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const seqan::Gaps&) [with TStream = std::basic_ostream; TSource = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 106 | : data_iterator(_other.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const seqan::Gaps&) [with TStream = std::basic_ostream; TSource = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 100 | : data_iterator(_it) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1256:18: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:242:20: required from 'int writeBsAlignment(TStream&, const seqan::BamIOContext&, TFragmentStore&, TContigGaps&, TId&, TScore&, seqan::BamAlignmentRecord&, TOptions&) [with TStream = std::basic_fstream; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TFragmentStore = seqan::FragmentStore; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TId = unsigned int; TScore = double; TOptions = AppOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1194:41: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ck-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp [ 35%] Linking CXX executable ../../../bin/four2three cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../../bin/four2three -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Built target four2three make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= Scanning dependencies of target bisar make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp [ 37%] Linking CXX executable ../../../bin/bisar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:580:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, TQualString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TQualString = seqan::String >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:458:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, TQualities&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TQualities = seqan::String >; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:680:13: required from 'int seqan::readRecord(TId&, TSequence&, TQualities&, seqan::SequenceStream&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TQualities = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:303:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/ext/new_allocator.h:33, BUILDSTDERR: from /usr/include/c++/9/riscv64-redhat-linux/bits/c++allocator.h:33, BUILDSTDERR: from /usr/include/c++/9/bits/allocator.h:46, BUILDSTDERR: from /usr/include/c++/9/bits/stl_tree.h:64, BUILDSTDERR: from /usr/include/c++/9/map:60, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/stdexcept:39, BUILDSTDERR: from /usr/include/c++/9/array:39, BUILDSTDERR: from /usr/include/c++/9/tuple:39, BUILDSTDERR: from /usr/include/c++/9/bits/stl_map.h:63, BUILDSTDERR: from /usr/include/c++/9/map:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../../bin/bisar -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target bisar make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= Scanning dependencies of target fx_fastq_stats make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp [ 37%] Linking CXX executable ../../../bin/fx_fastq_stats cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../../bin/fx_fastq_stats -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target fx_fastq_stats BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(seqan::String&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(seqan::String&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:219:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= Scanning dependencies of target fx_bam_coverage make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp [ 38%] Linking CXX executable ../../../bin/fx_bam_coverage cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../../bin/fx_bam_coverage -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_bam_coverage make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_out.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 190 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 192 | streamWriteChar(stream, '\t'); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 688 | Segment finderSegment(finderInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:701:60: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, BUILDSTDERR: | ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 199 | TAlign ali(align); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 444 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Dependent >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::BucketMap; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TSpec = seqan::IndexQGram, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | return _object; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15: required from 'void seqan::findIntervals(const seqan::Graph&, const TPropertyMap&, TValue, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = unsigned int; TCargo = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15: required from 'void seqan::findIntervals(const seqan::IntervalTree&, TValue, TValue, seqan::String&) [with TValue = unsigned int; TCargo = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:240:18: required from 'bool _checkRightMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:278:42: required from 'bool _checkMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:345:35: required from 'void _initialiseGraphMatePairs(QueryMatches >&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_algorithms.h:644:42: required from 'void _chainQueryMatches(seqan::StringSet > >&, seqan::String&, seqan::String&, const seqan::StringSet >&, seqan::StringSet >&, seqan::String >&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TScoreAlloc = seqan::String; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:224:122: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:12: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1949 | act_prop = property(pm,act_knot); BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:15: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1961 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:16: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1982 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSource = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TValue2 = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Host >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(seqan::Pattern&) [with TNeedle = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >; TSpec = seqan::Swift >; typename seqan::Needle >::Type = seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(seqan::Align&, const seqan::Align&, const seqan::String&) [with TSource1 = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSource2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec2 = seqan::Tag; TPos = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(seqan::Align&, const seqan::Align::Type, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 124 | it = iter(row(align, i), value(viewPos, i)); BUILDSTDERR: | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: 91 | Iter(Iter const & other) : BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:121:8: required from 'bool _writeGlobalBreakpoints(const seqan::String&, seqan::StringSet >&, seqan::StringSet&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::Vcf = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:271:94: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TTargetSpec = seqan::Alloc<>; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15: required from 'bool _importSequences(const CharString&, const CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:168: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:401:10: required from 'void seqan::assignSource(seqan::Gaps >&, const TSequence2&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSequence2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15: required from 'bool _importSequences(const CharString&, const CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:168: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TString2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Triple; TSource = seqan::Triple]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = seqan::Triple; TSource = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple*; TSource1 = seqan::Triple*; TSource2 = seqan::Triple*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple*; TSource1 = seqan::Triple*; TSource2 = seqan::Triple*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1929:12: required from 'void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:224:20: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]' BUILDSTDERR: 162 | inline Triple(Triple const & _p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /usr/include/c++/9/new: In function 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(seqan::LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8, BUILDSTDERR: inlined from 'TScoreValue seqan::_localAlignmentNext(seqan::LocalAlignmentFinder&, seqan::Gaps&, seqan::Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TGapsSpecV = seqan::Tag; TScore = seqan::Score >; TDiagonal = int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:39, BUILDSTDERR: inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TGapsSpecV = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:109:35, BUILDSTDERR: inlined from 'bool seqan::nextLocalAlignment(seqan::Align&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TAlignSpec = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:121:30, BUILDSTDERR: inlined from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:617:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: BUILDSTDERR: /usr/include/c++/9/new: In function 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ cmake --color= Scanning dependencies of target gustaf make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp [ 40%] Linking CXX executable ../../../bin/gustaf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../../bin/gustaf -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Built target gustaf make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= Scanning dependencies of target insegt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIOIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:14: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:21: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h: In function 'void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, seqan::FragmentStore&, TMap&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:225:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 225 | if (getValue(itAnno).typeId != INVALID_ID) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:228:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 228 | if (getValue(itAnno).contigId == INVALID_ID ) BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:23: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h: In function 'bool seqan::ngsOverlapper(TOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:901:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 901 | if (!readOutput.good()) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 903 | createReadCountGFF(readOutput, readAnnoStore, fragStore); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:908:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 908 | if (!annoOutput.good()) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:910:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 910 | createAnnoCountGFF(annoOutput, annoCountStore, annoNormStore, fragStore, mapO); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:915:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 915 | if (!tupleOutput.good()) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:917:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 917 | createTupleCountGFF(tupleOutput, tupleCountStore, fragStore, options.thresholdCount, options.thresholdRPKM); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp: In function 'int main(int, const char**)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:188:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 188 | if (res != ArgumentParser::PARSE_OK) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 191 | if (options.maxTuple) BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:45:64: required from 'void seqan::adjustParentEntries(seqan::FragmentStore&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:865:21: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1281:47: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1281 | Iter > tmp(it); BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:2: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' BUILDSTDERR: 415 | operator = (Iter const &_origin) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1283:9: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1283 | return tmp; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:2: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' BUILDSTDERR: 415 | operator = (Iter const &_origin) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:16: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const seqan::Graph&, const TPropertyMap&, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_intervaltree.h:182:15: required from 'void seqan::findIntervalsForInterval(seqan::String&, TIntervalTree&, TInterval&, const unsigned int&) [with TIntervalTree = seqan::IntervalTree; TInterval = seqan::Interval; TCargo = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:82:27: required from 'void seqan::getIdsForRead(TAnnoIds&, seqan::FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = seqan::StringSet >, seqan::Owner<> >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TIntervalTree = seqan::IntervalTree; TIntervals = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/fusion.h:775:18: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, seqan::FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = seqan::String >; TAnnoCountStore = seqan::String >; TTupleCountStore = seqan::String >; TTupleCountStore_Fusion = seqan::String >; TSpec = void; TConfig = seqan::FragmentStoreConfig]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:884:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:12: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1827 | act_prop = property(pm,act_knot); BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:15: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1838 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:16: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1859 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment >, seqan::InfixSegment>; TValue2 = const seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment >, seqan::InfixSegment>; TSource = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String >, seqan::GapAnchor, void>, seqan::Alloc<> >; TValue = seqan::ContigStoreElement >, seqan::GapAnchor, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1117:14: required from 'void seqan::_storeAppendContig(seqan::FragmentStore&, TId&, TName&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = unsigned int; TName = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:256:23: required from 'void seqan::_storeOneAnnotation(TFragmentStore&, seqan::IOContextGff_&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:331:32: required from 'void seqan::read(TFile&, seqan::FragmentStore&, seqan::Gff) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Gff = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:861:10: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30: required from 'void seqan::_readAlignments(TStreamOrReader&, seqan::BamIOContext&, seqan::FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > >, seqan::String > >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigAnchorGaps = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TMatchMateInfos = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30: required from 'void seqan::_readAlignments(TStreamOrReader&, seqan::BamIOContext&, seqan::FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > >, seqan::String > >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigAnchorGaps = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TMatchMateInfos = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24: required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TSpec = void; TConfig = seqan::FragmentStoreConfig; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, seqan::FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 534 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here BUILDSTDERR: 535 | case 'I': BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 534 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here BUILDSTDERR: 535 | case 'I': BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 564 | insertGaps(it, cigar[i].count); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here BUILDSTDERR: 565 | case 'D': BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:1: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp [ 41%] Linking CXX executable ../../../bin/insegt cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../../bin/insegt -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Built target insegt make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= Scanning dependencies of target mason_sim make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp BUILDSTDERR: [ 43%] BuildiIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const seqan::Graph&, const TPropertyMap&, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = GenomicInterval]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15: required from 'void seqan::findIntervals(const seqan::IntervalTree&, TValue, seqan::String&) [with TValue = int; TCargo = GenomicInterval]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:644:51: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:12: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1827 | act_prop = property(pm,act_knot); BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:15: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1838 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:16: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1859 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:246:46: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String > >; TValue = seqan::String >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::String >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35: BUILDSTDERR: /usr/include/c++/9/new: In member function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String > >; TValue = seqan::String >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::String >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: BUILDSTDERR: /usr/include/c++/9/new: In member function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ ng CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp [ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp [ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp [ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:372:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/stdexcept:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/stdexcept:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = char; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = char]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:69:40: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp [ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -WsIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:45: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 161 | _host(std::forward(host)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 165 | ModifiedString(typename Parameter_::Type host): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:80: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:45: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(seqan::ModifiedString&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::ModView > >; TTagSpec = seqan::Rooted_; typename seqan::Iterator, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:193:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:80: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:201:28: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:257:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/stdexcept:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:45: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 161 | _host(std::forward(host)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 165 | ModifiedString(typename Parameter_::Type host): BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:84: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:45: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(seqan::ModifiedString&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::ModView > >; TTagSpec = seqan::Rooted_; typename seqan::Iterator, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:84: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:67:28: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:144:70: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/stdexcept:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 190 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 192 | streamWriteChar(stream, '\t'); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(seqan::String&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(seqan::String&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:268:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/stdexcept:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp [ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp [ 50%] Linking CXX static library libmason_sim.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_sim BUILDSTDERR: make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(seqan::String&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(seqan::String&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:166:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Files/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= Scanning dependencies of target mason_methylation make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp [ 50%] Linking CXX executable ../../../bin/mason_methylation cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../../bin/mason_methylation -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_methylation make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= BUILDSTDERR: Scanning dependencies of In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:13: required from 'int seqan::readRecord(TId&, TSequence&, seqan::SequenceStream&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:202:52: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ target mason_frag_sequencing make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp [ 51%] Linking CXX executable ../../../bin/mason_frag_sequencing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../../bin/mason_frag_sequencing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_frag_sequencing make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_variator make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 190 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 192 | streamWriteChar(stream, '\t'); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:1085:48: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String; TValue = StructuralVariantRecord; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = StructuralVariantRecord; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const CharString&)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:317:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551504' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const CharString&)': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp [ 53%] Linking CXX executable ../../../bin/mason_variator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../../bin/mason_variator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Built target mason_variator make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= Scanning dependencies of target mason_genome make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIOIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 190 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 192 | streamWriteChar(stream, '\t'); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp: In member function 'int MasonSplicingApp::run()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=] BUILDSTDERR: 138 | catch (MasonIOException e) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:42: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:42: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp [ 54%] Linking CXX executable ../../../bin/mason_genome cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../../bin/mason_genome -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Built target mason_genome make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= Scanning dependencies of target mason_splicing make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 56%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp [ 56%] Linking CXX executable ../../../bin/mason_splicing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 190 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 192 | streamWriteChar(stream, '\t'); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:243:34: required from 'void seqan::_reinitArrayGaps(seqan::Gaps >&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:153:25: required from 'seqan::Gaps >::Gaps(TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:221:57: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 686 | return Iter >(container(left), hostIterator(left) - right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TBand = seqan::DPBand_ >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:40: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBand_&, const seqan::DPProfile_&) [with TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = seqan::Tag; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; TGapsTag = seqan::TracebackConfig_, seqan::Tag >; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TAlgoTag = seqan::Tag; typename seqan::Value >::Type = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, int, int) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, const TValue2&, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(seqan::String&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(seqan::String&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:817:58: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/ext/new_allocator.h:33, BUILDSTDERR: from /usr/include/c++/9/riscv64-redhat-linux/bits/c++allocator.h:33, BUILDSTDERR: from /usr/include/c++/9/bits/allocator.h:46, BUILDSTDERR: from /usr/include/c++/9/vector:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:40: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../../bin/mason_splicing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 56%] Built target mason_splicing make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_simulator make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp [ 58%] Linking CXX executable ../../../bin/mason_simulator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-taIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = seqan::CigarElement<>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22, BUILDSTDERR: inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:356:28: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38: BUILDSTDERR: /usr/include/c++/9/new: In function 'std::pair appendOperation(TCigarString&, char)': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, BUILDSTDERR: inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38: BUILDSTDERR: /usr/include/c++/9/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bles -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../../bin/mason_simulator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Built target mason_simulator make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= Scanning dependencies of target mason_tests make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp [ 59%] Linking CXX executable ../../../bin/mason_tests cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../../bin/mason_tests -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Built target mason_tests make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddiIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 190 | else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 192 | streamWriteChar(stream, '\t'); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp: In member function 'int MasonMaterializerApp::run()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:110:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=] BUILDSTDERR: 110 | catch (MasonIOException e) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ r/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= Scanning dependencies of target mason_materializer make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp [ 61%] Linking CXX executable ../../../bin/mason_materializer cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../../bin/mason_materializer -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target mason_materializer make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= Scanning dependencies of target roi_plot_thumbnails make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' BUILDSTDERR: make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/rIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ oi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp [ 61%] Linking CXX executable ../../../bin/roi_plot_thumbnails cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../../bin/roi_plot_thumbnails -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target roi_plot_thumbnails make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= Scanning dependencies of target roi_feature_projection make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-sIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:43: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/gff_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ecurity -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp [ 64%] Linking CXX executable ../../../bin/roi_feature_projection cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FOIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 148 | for (unsigned i = 0; i < length(mat); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 152 | String<__int64> av; // Average branch length to a combined node BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 416 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 420 | TString seq; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 534 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 538 | String mat; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 878 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 880 | TName seq1; BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 985 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 988 | TVertexDescriptor lastVertex = nilVertex; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore&, TGappedConsensus&, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 389 | diff = (itGaps->gapPos - itGaps->seqPos); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 148 | for (unsigned i = 0; i < length(mat); ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 152 | String<__int64> av; // Average branch length to a combined node BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 416 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 420 | TString seq; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 534 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 538 | String mat; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 878 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 880 | TName seq1; BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 985 | if (atEnd(reader)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 988 | TVertexDescriptor lastVertex = nilVertex; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore&, TGappedConsensus&, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 389 | diff = (itGaps->gapPos - itGaps->seqPos); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../../bin/roi_feature_projection -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Built target roi_feature_projection make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= Scanning dependencies of target bam2roi make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp BUILDSTDERR: [ 67%] Linking CXX executable ..In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:45: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 198 | if (skipWhitespaces(reader) != 0) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 201 | int kickout = 0; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 373 | if (pm_options.verbose) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 376 | resize(avg,pm_options.totalN,(TFloat)0.0); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(seqan::RazerSOptions&, TFile&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 934 | if (value(reader) == 'e') BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 938 | bool atLeastOneFound = false; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:44: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/sstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:42: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /../../bin/bam2roi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../../bin/bam2roi -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Built target bam2roi make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target test_funcs_param_chooser make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp [ 69%] Linking CXX executable ../../../bin/test_funcs_param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protectionIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 198 | if (skipWhitespaces(reader) != 0) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 201 | int kickout = 0; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 373 | if (pm_options.verbose) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 376 | resize(avg,pm_options.totalN,(TFloat)0.0); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(seqan::RazerSOptions&, TFile&, seqan::ParamChooserOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 934 | if (value(reader) == 'e') BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 938 | bool atLeastOneFound = false; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec; seqan::SwiftSemiGlobal = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:19: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1466 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:444:28: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1467:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2311:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double, TSize) [with THaystack = seqan::String, seqan::Alloc<> >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Tag >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, seqan::Pattern > > >&, double) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2314:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:44: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' BUILDSTDERR: 368 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 333 | class Index > { BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:28, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1450:13: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1468:19: required from 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet >, seqan::Owner > >; TMyersPatterns = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec; seqan::SwiftSemiGlobal = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16: required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TReadIDs = seqan::StringSet > >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TDistr = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void; typename seqan::Parameter_::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; THasState = seqan::True; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&, int) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1473:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 294 | TContainer cont(container(host(me))); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16: required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = seqan::StringSet >, seqan::Owner > >; TReadIDs = seqan::StringSet > >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TDistr = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String >; TSize = int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::OneGappedShape>; TDir = seqan::String; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::OneGappedShape>; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::True]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::GappedShape > >; TDir = seqan::String; TBucketMap = seqan::Nothing; TStepSize = long unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSADir, seqan::Default) [with TText = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag; seqan::FibreSADir = const seqan::Tag; seqan::Default = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >, seqan::Owner > >; TSpec = seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag >; TFibre = seqan::FibreSADir_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::GappedShape > >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2087:9: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TCounts = int; TSpec = seqan::RazerSSpec; TShape = seqan::Shape, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenomeSet = seqan::StringSet, seqan::Alloc<> > >; TReadSet = seqan::StringSet >, seqan::Owner > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:6: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 636 | ++del; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:5: note: here BUILDSTDERR: 638 | case SEQAN_INSERT: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:6: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 656 | ++del; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:5: note: here BUILDSTDERR: 658 | case SEQAN_INSERT: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, float>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:6: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 636 | ++del; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:5: note: here BUILDSTDERR: 638 | case SEQAN_INSERT: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:6: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 656 | ++del; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:5: note: here BUILDSTDERR: 658 | case SEQAN_INSERT: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:32: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../../bin/test_funcs_param_chooser make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Built target test_funcs_param_chooser make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target param_chooser make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp [ 70%] Linking CXX executable ../../../bin/param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../../bin/param_chooser -lrt BUILDSTDERR: make[2]: Leaving directory '/builddir/build/BUILD/seqanIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::FunctorGlobalEditDistAlign; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 358 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 399 | indexL.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 413 | indexR.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 841 | tls.shape = shape; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 868 | index.shape = shape; BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::FunctorGlobalEditDistAlign; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::FunctorGlobalEditDistAlign; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 777 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSpec = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = void; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 462 | indexShape(host(pattern)) = pattern.shape; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSpec = seqan::Hamming_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = seqan::Hamming_; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 462 | indexShape(host(pattern)) = pattern.shape; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Pigeonhole; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSpec = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = void; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 462 | indexShape(host(pattern)) = pattern.shape; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73: required from 'bool seqan::windowFindBegin(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, unsigned int, TThreadLocalStorages&, const seqan::String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(seqan::FragmentStore&, TThreadLocalStorages&, const seqan::String >&, const TContigId&, TCounts&, char, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TContigId = unsigned int; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSpec = void]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = void; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 462 | indexShape(host(pattern)) = pattern.shape; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(seqan::FragmentStore&, TThreadLocalStorages&, const seqan::String >&, const TContigId&, TCounts&, char, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TContigId = unsigned int; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(seqan::FragmentStore&, TThreadLocalStorages&, const seqan::String >&, const TContigId&, TCounts&, char, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TContigId = unsigned int; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Pigeonhole; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSpec = seqan::Hamming_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = seqan::Hamming_; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 462 | indexShape(host(pattern)) = pattern.shape; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73: required from 'bool seqan::windowFindBegin(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, unsigned int, TThreadLocalStorages&, const seqan::String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFloat = double; TSpec = seqan::Hamming_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = seqan::Hamming_; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 462 | indexShape(host(pattern)) = pattern.shape; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(seqan::Pattern >&, TFloat, TSize_) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFloat = double; TSize_ = int; TSpec = seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 713 | pattern.shape = indexShape(host(pattern)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(seqan::FragmentStore&, TThreadLocalStorages&, const seqan::String >&, const TContigId&, TCounts&, char, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TContigId = unsigned int; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(seqan::FragmentStore&, TThreadLocalStorages&, const seqan::String >&, const TContigId&, TCounts&, char, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TContigId = unsigned int; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const seqan::RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(seqan::FragmentStore&, TThreadLocalStorages&, const seqan::String >&, const TContigId&, TCounts&, char, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TContigId = unsigned int; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2155 | TGenomeInfix origInf(inf); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2238 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2239 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2341 | TReadRev readRev(readPrefix); BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2342 | TGenomeInfixRev infRev(inf); BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, seqan::FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; TAlignFunctor = seqan::FunctorGlobalEditDistAlign; seqan::Sam = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, seqan::Tag) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::String >; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(seqan::Gaps&, TPosition) [with TSequence = seqan::String >; TSpec = seqan::AnchorGaps, seqan::Alloc<> > >; TPosition = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; TScore = seqan::Score >; TShrinkMatches = seqan::True]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1231:40: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 742 | Iter > > result = lhs; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 744 | return result; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:15: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' BUILDSTDERR: 117 | Iter const & operator = (Iter const & other_) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:193:23: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:679:20: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 532 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Pigeonhole; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:896:43: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 609 | return Iter >(container(left), hostIterator(left) + right); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30: required from 'bool seqan::windowFindBegin(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, unsigned int, TThreadLocalStorages&, const seqan::String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Pigeonhole; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Hamming_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TFilterSpec = seqan::Pigeonhole; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Swift > >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30: required from 'bool seqan::windowFindBegin(seqan::Finder >&, seqan::Pattern >&, double) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, unsigned int, TThreadLocalStorages&, const seqan::String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Swift > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const seqan::RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 778 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24: required from 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::UngappedShape<0> >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = const seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = const seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::UngappedShape<0> >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String >; TSize = int; TValue = seqan::SimpleType; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:50: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2241:41: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 768 | return TIterator(me, end(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Pigeonhole; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = void; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::UngappedShape<0> >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Pigeonhole; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36: required from 'void seqan::_mapMatePairReads(TMatches&, seqan::FragmentStore&, unsigned int, seqan::Pattern&, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TReadIndex = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:50: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1105:63: required from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = const seqan::Segment >, seqan::InfixSegment>; TNeedle2 = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1297:44: required from 'bool seqan::_stateInit(TFinder&, const TNeedle&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TNeedle2 = const seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1654:18: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TNeedle2 = const seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::Segment >, seqan::InfixSegment>; TNeedle2 = const seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::AlignTextBanded; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2177:16: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:35: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 793 | return container(hostIterator(me)); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_interface.h:752:24: required from 'void seqan::goEnd(TIterator&) [with TIterator = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:948:7: required from 'void seqan::goEnd(seqan::Finder&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1656:18: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TNeedle2 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::FindPrefix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder >, seqan::InfixSegment>, seqan::Tag >, void>; TNeedle = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TNeedle2 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = seqan::AlignTextBanded; TFindBeginPatternSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2245:32: required from 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSOptions<>, seqan::RazerSMode, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String >; TRead = seqan::Segment >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 294 | TContainer cont(container(host(me))); BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSpec = seqan::Pigeonhole; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(seqan::Pattern >&, const TOptions&) [with TIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TPigeonholeSpec = void; TOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Pigeonhole >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 277 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = const seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = const seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = const seqan::Segment >, seqan::InfixSegment>; TTargetSpec = seqan::Alloc<>; TValue = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = const seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TValue = seqan::Segment >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 277 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TValue2 = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(seqan::Pattern&) [with TNeedle = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSpec = seqan::Swift > >; typename seqan::Host >::Type = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSOptions<>; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:8: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class Index > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Swift > > >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Pigeonhole >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 277 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 277 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Swift > > >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | class Pattern > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Pigeonhole >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Swift > > >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Pigeonhole >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:3: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 135 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(seqan::PairedMatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinderL = seqan::Finder >, seqan::Swift > > >; TFilterFinderR = seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(seqan::MatchFilter&, unsigned int) [with TOptionsSpec = seqan::RazerSSpec<>; TReadSeqSet = seqan::StringSet >, seqan::Owner > >; TCallback = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(seqan::ThreadLocalStorage >&, seqan::String >&, bool) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder >, seqan::Swift > > >; TFilterPattern = seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSOptions<>; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 116 | class ThreadLocalStorage< BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 117 | MapSingleReads< BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 118 | TMatches_, BUILDSTDERR: | ~~~~~~~~~~ BUILDSTDERR: 119 | TFragmentStore, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 120 | TFilterFinder_, BUILDSTDERR: | ~~~~~~~~~~~~~~~ BUILDSTDERR: 121 | TFilterPattern_, BUILDSTDERR: | ~~~~~~~~~~~~~~~~ BUILDSTDERR: 122 | TShape, BUILDSTDERR: | ~~~~~~~ BUILDSTDERR: 123 | TOptions, BUILDSTDERR: | ~~~~~~~~~ BUILDSTDERR: 124 | TCounts, BUILDSTDERR: | ~~~~~~~~ BUILDSTDERR: 125 | TRazerSMode> > BUILDSTDERR: | ~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:3: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' BUILDSTDERR: 330 | Shape(Shape const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String >; TPosition = int; TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String, double>, seqan::Alloc<> >; TShape = seqan::String >; TLogErrorDistr = seqan::String; TDistance = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String; TShape = seqan::Shape, seqan::GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag; TErrorDist = seqan::String; seqan::ThreshExact = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:50: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >, seqan::Tag >; TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Value::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; typename seqan::Reference > >::Type = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 84 | class ThreadLocalStorage > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here BUILDSTDERR: 296 | new( (void*) & value(it) ) TNonConstValue(param_); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::UngappedShape<0> >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >; TSource = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TSource = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >; TValue2 = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::GappedShape > >; TRazerSMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazersMode = seqan::RazerSMode]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&, seqan::RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesAll_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(seqan::FragmentStore&, TCounts&, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:3: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' BUILDSTDERR: 159 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:57: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -1.4.2/build/Release' [ 70%] Built target param_chooser make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= Scanning dependencies of target razers3 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp [ 72%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp [ 72%] Linking CXX executable ../../../bin/razers3 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasyncIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1302:14: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1323:20: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1331:20: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:114:56: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:1: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../../bin/razers3 -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 72%] Built target razers3 make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_simulate_reads make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp [ 74%] Linking CXX executable ../../../bin/razers3_simulate_reads cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = int; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:724:19: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:74: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long int; typename seqan::Size::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String, seqan::Alloc<> >; TFastaSeq = seqan::Segment >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector&) [with TSeq = seqan::String, seqan::Alloc<> >; TFileSeq = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:47: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:74: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19: required from 'bool seqan::loadReads(seqan::FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TRazerSOptions = seqan::RazerSOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:74: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/istream:38, BUILDSTDERR: from /usr/include/c++/9/fstream:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:1: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../../bin/razers3_simulate_reads -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Built target razers3_simulate_reads make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_quality2prob make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp [ 75%] Linking CXX executable ../../../bin/razers3_quality2prob cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../../bin/razers3_quality2prob -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Built target razers3_quality2prob BUILDSTDERR: make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/repIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>; TSource = GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1242:11: required from 'void seqan::assignValue(T&, TPos, const TValue&) [with T = seqan::String, seqan::AlignedReadStoreElement, void>, long unsigned int>, seqan::Alloc<> >; TValue = GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>; TPos = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_property.h:178:13: required from 'void seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = seqan::String, seqan::AlignedReadStoreElement, void>, long unsigned int>, seqan::Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:191:23: required from 'GraphCargo& registerRead(ReadGraph&, typename ReadGraph::TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; typename ReadGraph::TId = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_construction.h:82:59: required from 'void construct(ReadGraph&, const seqan::String > >&, const seqan::FragmentStore&, TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:212:60: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>& GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>::operator=(const GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph.h:32, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:34: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note: because 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>' has user-provided 'GraphCargo::GraphCargo(const GraphCargo&) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int]' BUILDSTDERR: 44 | GraphCargo(GraphCargo const& other) BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:186:27: required from 'void parseContig(const seqan::FragmentStore&, TId, seqan::String&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int; TAnnotatedCandidateColumn = seqan::Pair > >; TScannerType = SimpleColumn]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:64: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, seqan::FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:38: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, seqan::FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:38: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Triple; TSource = seqan::Triple]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = seqan::Triple; TSource = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple*; TSource1 = seqan::Triple*; TSource2 = seqan::Triple*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::Triple*; TSource1 = seqan::Triple*; TSource2 = seqan::Triple*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::Triple; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::Triple; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::Triple; TTargetSpec = seqan::Alloc<>; TSource = seqan::Triple; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String >; TSource = seqan::Triple]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:197:19: required from 'void parseContig(const seqan::FragmentStore&, TId, seqan::String&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int; TAnnotatedCandidateColumn = seqan::Pair > >; TScannerType = SimpleColumn]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:64: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = char; T2 = unsigned int; T3 = long unsigned int; TSpec = void]' BUILDSTDERR: 162 | inline Triple(Triple const & _p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:22: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= Scanning dependencies of target rep_sep make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp [ 77%] Linking CXX executable ../../../bin/rep_sep cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../../bin/rep_sep -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Built target rep_sep make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= Scanning dependencies of target join make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build BUILDSTDERR: make[2]: Entering directory '/builddir/build/In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:53: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:80: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:80: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:80: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 103 | struct VertexSA : public VertexEsa BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:3: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' BUILDSTDERR: 290 | VertexEsa(VertexEsa const &other): BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TShape = seqan::Shape >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet > >, seqan::Owner > >; TShape = seqan::Shape >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:80: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TShape = seqan::Shape >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet > >, seqan::Owner > >; TShape = seqan::Shape >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:13: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(seqan::Finder2, seqan::Index, seqan::Backtracking, TSpec> >&, const seqan::StageExact_&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here BUILDSTDERR: 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(seqan::Finder2, seqan::Index, seqan::Backtracking, TSpec> >&, const seqan::StageExact_&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here BUILDSTDERR: 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:13: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:13: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:13: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:13: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment > >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:13: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TValue = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(seqan::Pipe&, TValue&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>; TSpec = seqan::Counter; TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>, seqan::Counter>; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | Ref_ = *me; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TValue = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc >; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc >; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = Db, seqan::Alloc > >, seqan::Owner > >, void>; TValue2 = Db, seqan::Alloc > >, seqan::Owner > >, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = Db, seqan::Alloc > >, seqan::Owner > >, void>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = Db, seqan::Alloc > >, seqan::Owner > >, void>; typename seqan::Reference > >::Type = Db, seqan::Alloc > >, seqan::Owner > >, void>&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:778:40: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(seqan::Handler::TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:13: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:9: required from 'void seqan::pop(seqan::Pool&, TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 926 | Ref_ = *cur; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 438 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 438 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:9: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, unsigned int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here BUILDSTDERR: 144 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here BUILDSTDERR: 147 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here BUILDSTDERR: 151 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here BUILDSTDERR: 154 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here BUILDSTDERR: 158 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /usr/include/string.h:494, BUILDSTDERR: from /usr/include/c++/9/cstring:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void* memset(void*, int, size_t)', BUILDSTDERR: inlined from 'void seqan::_myersPreInit(seqan::PatternState_&, seqan::False) [with TNeedle = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Myers, seqan::True, void>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:975:11, BUILDSTDERR: inlined from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; TNeedle = seqan::Segment > >, seqan::InfixSegment>; TNeedle2 = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::FindPrefix; TFinderCSP = seqan::NMatchesN_; TPatternCSP = seqan::NMatchesN_; TFindBeginPatternSpec = void]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1060:18, BUILDSTDERR: inlined from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1636:35: BUILDSTDERR: /usr/include/bits/string_fortified.h:71:33: warning: 'void* __builtin_memset(void*, int, long unsigned int)' offset [2561, 2568] from the object at 'state' is out of the bounds of referenced subobject 'seqan::MyersSmallState_ > >, seqan::InfixSegment>, seqan::AlignTextBanded >::bitMasks' with type 'long unsigned int [256]' at offset 512 [-Warray-bounds] BUILDSTDERR: 71 | return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew7NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew3NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILD/seqan-1.4.2/build/Release' [ 79%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp [ 79%] Linking CXX executable ../../../bin/join cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/join.dir/join.cpp.o -o ../../../bin/join -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 79%] Built target join make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= Scanning dependencies of target search make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 79%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fsIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:53: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 780 | dbIndex.index = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 902 | dbIndex.index[seedSet] = TIndex(db.text); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' BUILDSTDERR: 86 | Index(Index const & other) : BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 103 | struct VertexSA : public VertexEsa BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:3: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' BUILDSTDERR: 290 | VertexEsa(VertexEsa const &other): BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TShape = seqan::Shape >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet > >, seqan::Owner > >; TShape = seqan::Shape >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const seqan::StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TShape = seqan::Shape >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TStepSize = unsigned int; TWithConstraints = seqan::False]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = seqan::String >, seqan::Alloc<> >; TDir = seqan::String >; TBucketMap = seqan::Nothing; TText = seqan::StringSet > >, seqan::Owner > >; TShape = seqan::Shape >; TStepSize = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:52: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:63: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:53: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:64: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2147 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:13: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(seqan::Finder2, seqan::Index, seqan::Backtracking, TSpec> >&, const seqan::StageExact_&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here BUILDSTDERR: 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(seqan::Finder2, seqan::Index, seqan::Backtracking, TSpec> >&, const seqan::StageExact_&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageExact_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:8: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 244 | class Iter< TIndex, VSTree< TopDown > > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here BUILDSTDERR: 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:13: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:148:49: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 148 | data_iterator(other_.data_iterator) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:13: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:13: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:13: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 541 | return TIterator(me, begin(me, Standard())); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: 138 | Iter(typename Parameter_::Type container_, TIterator it_) BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(seqan::Finder2, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(seqan::Finder2, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | it._parentDesc = value(it); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' BUILDSTDERR: 122 | VertexSA(VertexSA const & other) : BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:13: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment > >, seqan::InfixSegment>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:13: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 470 | return me; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' BUILDSTDERR: 197 | operator = (Segment const & source) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TValue = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(seqan::Pipe&, TValue&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>; TSpec = seqan::Counter; TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>, seqan::Counter>; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | Ref_ = *me; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String > >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String > >; TSetSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TValue = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc >; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc >; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TValue2 = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; typename seqan::Reference > >::Type = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:797:45: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(seqan::Handler::TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:13: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:9: required from 'void seqan::pop(seqan::Pool&, TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 926 | Ref_ = *cur; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 97 | struct Pair > BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 438 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 438 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' BUILDSTDERR: 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:9: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, unsigned int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:51:60: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(seqan::PriorityType&, TValue, TSize, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >; TSize = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::IndexSa >; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here BUILDSTDERR: 144 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here BUILDSTDERR: 147 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here BUILDSTDERR: 151 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here BUILDSTDERR: 154 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here BUILDSTDERR: 158 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /usr/include/string.h:494, BUILDSTDERR: from /usr/include/c++/9/cstring:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:48, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void* memset(void*, int, size_t)', BUILDSTDERR: inlined from 'void seqan::_myersPreInit(seqan::PatternState_&, seqan::False) [with TNeedle = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Myers, seqan::True, void>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:975:11, BUILDSTDERR: inlined from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; TNeedle = seqan::Segment > >, seqan::InfixSegment>; TNeedle2 = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::FindPrefix; TFinderCSP = seqan::NMatchesN_; TPatternCSP = seqan::NMatchesN_; TFindBeginPatternSpec = void]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1060:18, BUILDSTDERR: inlined from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1636:35: BUILDSTDERR: /usr/include/bits/string_fortified.h:71:33: warning: 'void* __builtin_memset(void*, int, long unsigned int)' offset [2561, 2568] from the object at 'state' is out of the bounds of referenced subobject 'seqan::MyersSmallState_ > >, seqan::InfixSegment>, seqan::AlignTextBanded >::bitMasks' with type 'long unsigned int [256]' at offset 512 [-Warray-bounds] BUILDSTDERR: 71 | return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In member function 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tuple >, seqan::Tag >, seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >, seqan::Filter >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > > > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew7NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended >, seqan::Tag > >; TLess = seqan::MergeStreamComparer >, seqan::Tag >, seqan::_skew3NComp >, seqan::Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, BUILDSTDERR: inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:11, BUILDSTDERR: inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4, BUILDSTDERR: inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, BUILDSTDERR: inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42, BUILDSTDERR: inlined from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: BUILDSTDERR: /usr/include/c++/9/new: In function 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp: In function 'seqan::ArgumentParser initParser()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:610:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BUILDSTDERR: 610 | std::auto_ptr argParseBuilder; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/locale_conv.h:41, BUILDSTDERR: from /usr/include/c++/9/locale:43, BUILDSTDERR: from /usr/include/c++/9/iomanip:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:47, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here BUILDSTDERR: 53 | template class auto_ptr; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:71: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of 'unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:411:12: required from 'unsigned int stripPairBatch(seqan::StringSet >&, seqan::StringSet&, seqan::StringSet >&, seqan::StringSet&, AdapterTrimmingStats&, bool) [with TSeq = seqan::String >; TId = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1926:27: required from 'void adapterTrimmingStage(AdapterTrimmingParams&, TSeqs&, TIds&, TSeqs&, TIds&, bool) [with TSeqs = seqan::String > > >; TIds = seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2726:101: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:9: warning: implicitly-declared 'seqan::Align >, seqan::Tag >::Align(const seqan::Align >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 297 | TAlign align = ret.i2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSource = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSource = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2660:65: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:3: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' BUILDSTDERR: 548 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49: required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet&, seqan::StringSet&, unsigned int, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:13: required from 'int seqan::readBatch(seqan::StringSet&, seqan::StringSet&, seqan::SequenceStream&, unsigned int) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1225:55: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49: required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet&, seqan::StringSet&, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:13: required from 'int seqan::readAll(seqan::StringSet&, seqan::StringSet&, seqan::SequenceStream&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1254:68: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(seqan::Pipe&, TValue&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>; TSpec = seqan::Counter; TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>, seqan::Counter>; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | Ref_ = *me; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:55: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const seqan::Pair&, const seqan::String&) [with TResult = seqan::Pair >; TSize = long unsigned int; TSpec = seqan::Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16: required from 'typename seqan::Suffix::Type seqan::suffix(const seqan::StringSet&, const TPosition&) [with TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TPosition = seqan::Pair >; typename seqan::Suffix::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25: required from 'seqan::Pair >::Type> seqan::_equalRangeSA(TText&, seqan::SearchTreeIterator, TQuery&, typename seqan::Difference::Type) [with TText = const seqan::StringSet, seqan::Alloc<> > >; TSA = const seqan::String >, seqan::Alloc<> >; TSpec = seqan::SortedList; TQuery = const seqan::String >; typename seqan::Iterator >::Type = const seqan::Pair >*; typename seqan::Difference::Type = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23: required from 'seqan::Pair >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSA = seqan::String >, seqan::Alloc<> >; TQuery = seqan::String >; typename seqan::Iterator >::Type = const seqan::Pair >*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >; seqan::EsaFindMlr = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2660:65: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 699 | result = pos; BUILDSTDERR: | ~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22: required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >; TMulti = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24: required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2656:59: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(seqan::Handler::TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:13: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:9: required from 'void seqan::pop(seqan::Pool&, TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 926 | Ref_ = *cur; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22: required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >; TMulti = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24: required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2656:59: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSource = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TValue2 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; typename seqan::Parameter_ >::Type = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2660:65: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:3: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' BUILDSTDERR: 548 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:9: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /usr/include/c++/9/bits/predefined_ops.h:143:18: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 3, int> >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:81:17: required from 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1910:34: required from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1942:38: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /usr/include/c++/9/bits/predefined_ops.h:143:18: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 1, int> >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:81:17: required from 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1910:34: required from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1942:38: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /usr/include/c++/9/bits/predefined_ops.h:143:18: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 2, int> >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:81:17: required from 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1910:34: required from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1942:38: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here BUILDSTDERR: 144 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here BUILDSTDERR: 147 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here BUILDSTDERR: 151 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here BUILDSTDERR: 154 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here BUILDSTDERR: 158 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:53: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp [ 80%] Linking CXX executable ../../../bin/search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/search.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/search.dir/search.cpp.o -o ../../../bin/search -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Built target search make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_flexlib make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp BUILDSTDERR: [ 82In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:54, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:52: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22: required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet, seqan::Alloc<> > >; TIds = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22: required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet, seqan::Alloc<> > >; TIds = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [31]; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = char [31]; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TString2 = char [31]; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> > >; TValue = char [31]]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:59:16: required from 'void SEQAN_TEST_findN_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:625:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char [7]; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = char [7]; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = char [7]; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet > >; TValue = char [7]]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:335:16: required from 'void SEQAN_TEST_processN_paired_multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:629:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [11]; TExpand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = char [11]; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TString2 = char [11]; TExpand = seqan::TagGenerous_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> > >; TValue = char [11]]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:427:16: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ %] Linking CXX static library libseqan_flexlib.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -P CMakeFiles/seqan_flexlib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexlib.dir/link.txt --verbose=1 /usr/bin/ar qc libseqan_flexlib.a CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o /usr/bin/ranlib libseqan_flexlib.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Built target seqan_flexlib make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_general_processing make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp [ 83%] Linking CXX executable ../../../bin/test_sflex_general_processing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -o ../../../bin/test_sflex_general_processing -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 83%] Built target test_sflex_general_processing make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_flexbar make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 83%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 85%] Linking CXX executable ../../../bin/seqan_flexbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -o ../../../bin/seqan_flexbar libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Built target seqan_flexbar BUILDSTDERR: make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/tIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String >; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:13: required from 'int seqan::readRecord(TId&, TSequence&, seqan::SequenceStream&) [with TId = seqan::String >; TSequence = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:150:24: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7: required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String >; TSpec = Mean]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7: required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String >; TSpec = Mean]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ est_sflex_trimming.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_trimming make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp [ 87%] Linking CXX executable ../../../bin/test_sflex_trimming cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -o ../../../bin/test_sflex_trimming -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Built target test_sflex_trimming make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= Scanning dependencies of target sflexFilter make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 88%] Linking CXX executable ../../../bin/sflexFilter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexFilter libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Built target sflexFilter make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_adapter make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build BUILDSTDERR: make[2]: Entering directory '/builddir/build/BUILD/seqan-In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:51: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of 'unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:224:29: required from 'void SEQAN_TEST_strip_pair_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:245:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:9: warning: implicitly-declared 'seqan::Align > >::Align(const seqan::Align > >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 297 | TAlign align = ret.i2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' BUILDSTDERR: 131 | Align & operator=(Align const & other) BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:59:15: required from 'void SEQAN_TEST_get_overlap_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:239:5: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::String >; typename seqan::Reference > >::Type = seqan::String >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:368:17: required from 'typename seqan::Source > >::Type& seqan::source(seqan::Gaps >&) [with TSequence = seqan::String >; typename seqan::Source > >::Type = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:230:22: required from 'unsigned int getOverlap(TAlign&) [with TAlign = seqan::Align > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:533:26: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1.4.2/build/Release' [ 90%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp [ 90%] Linking CXX executable ../../../bin/test_sflex_adapter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -o ../../../bin/test_sflex_adapter -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 90%] Built target test_sflex_adapter make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= Scanning dependencies of target sflexDMulti make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=DEMULTIPLEXING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 91%] Linking CXX executable ../../../bin/sflexDMulti cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexDMulti.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexDMulti libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Built target sflexDMulti make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_demultiplex make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o BUILDSTDERR: cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -WstrictIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 313 | LCP[isa - 1] = h; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 380 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 484 | LCP[i] = h | mark; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 504 | } else BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 70 | if (length(seqH) < length(seqV)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 409 | if ((actualCol == 0) || (actualRow == 0)) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 2357 | if (alignQualityStoreLengthPre == 0u) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index > >, seqan::IndexEsa<> >; TSource = seqan::Index > >, seqan::IndexEsa<> >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >; TSource = seqan::Index > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:322:22: required from 'void SEQAN_TEST_findAllExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:552:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index > >, seqan::IndexEsa<> >& seqan::Index > >, seqan::IndexEsa<> >::operator=(const seqan::Index > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:3: note: because 'seqan::Index > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' BUILDSTDERR: 548 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSource = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSource = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(seqan::Holder >&, const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 142 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:3: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' BUILDSTDERR: 548 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:177:13: required from 'void SEQAN_TEST_buildVariations_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:549:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const seqan::Pair&, const seqan::String&) [with TResult = seqan::Pair >; TSize = long unsigned int; TSpec = seqan::Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16: required from 'typename seqan::Suffix::Type seqan::suffix(const seqan::StringSet&, const TPosition&) [with TString = seqan::String >; TSpec = seqan::Owner<>; TPosition = seqan::Pair >; typename seqan::Suffix::Type = seqan::Segment >, seqan::SuffixSegment>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25: required from 'seqan::Pair >::Type> seqan::_equalRangeSA(TText&, seqan::SearchTreeIterator, TQuery&, typename seqan::Difference::Type) [with TText = const seqan::StringSet > >; TSA = const seqan::String >, seqan::Alloc<> >; TSpec = seqan::SortedList; TQuery = const seqan::String >; typename seqan::Iterator >::Type = const seqan::Pair >*; typename seqan::Difference::Type = long int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23: required from 'seqan::Pair >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = seqan::StringSet > >; TSA = seqan::String >, seqan::Alloc<> >; TQuery = seqan::String >; typename seqan::Iterator >::Type = const seqan::Pair >*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >; seqan::EsaFindMlr = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 699 | result = pos; BUILDSTDERR: | ~~~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 802 | *_cur = *src; BUILDSTDERR: | ~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49: required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet&, seqan::StringSet&, unsigned int, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:13: required from 'int seqan::readBatch(seqan::StringSet&, seqan::StringSet&, seqan::SequenceStream&, unsigned int) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:72:45: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = seqan::String >; TPass = seqan::DoublePass >; seqan::Fasta = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49: required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet&, seqan::StringSet&, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:13: required from 'int seqan::readAll(seqan::StringSet&, seqan::StringSet&, seqan::SequenceStream&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:90:34: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index > >, seqan::IndexEsa<> >; TSource = seqan::Index > >, seqan::IndexEsa<> >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >; TValue2 = seqan::Index > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >; typename seqan::Reference > >::Type = seqan::Index > >, seqan::IndexEsa<> >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; typename seqan::Parameter_ >::Type = seqan::Index > >, seqan::IndexEsa<> >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = seqan::Finder > >, seqan::IndexEsa<> > >; typename seqan::Parameter_::Type>::Type = seqan::Index > >, seqan::IndexEsa<> >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1928:40: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >; seqan::EsaFindMlr = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index > >, seqan::IndexEsa<> >& seqan::Index > >, seqan::IndexEsa<> >::operator=(const seqan::Index > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:3: note: because 'seqan::Index > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' BUILDSTDERR: 548 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 347 | o1.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 357 | o0.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | o3.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 365 | o5.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 369 | o6.i1 = typename Value::Type, 1>::Type(); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:118: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:119: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:120: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:121: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:122: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:123: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; BUILDSTDERR: | ~~~~~~^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairIncrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1032 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(seqan::Pipe&, TValue&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>; TSpec = seqan::Counter; TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>, seqan::Counter>; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 619 | Ref_ = *me; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9: required from 'void clipBarcodes(TSeqs&, const seqan::String&, unsigned int) [with TSeqs = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14: required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(seqan::String&, TSize, TBeginPosition, TEndPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String >; TBeginPosition = int; TEndPosition = unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9: required from 'void clipBarcodes(TSeqs&, const seqan::String&, unsigned int) [with TSeqs = seqan::StringSet > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14: required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSource = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TValue2 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; typename seqan::Reference > >::Type = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; typename seqan::Parameter_ >::Type = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 133 | target = source; BUILDSTDERR: | ~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:3: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' BUILDSTDERR: 548 | Index(Index const &other): BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 497 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(seqan::Handler::TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:13: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:9: required from 'void seqan::pop(seqan::Pool&, TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 926 | Ref_ = *cur; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 599 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here BUILDSTDERR: 95 | struct Pair BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; TOut1 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut2 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut4 = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 134 | tmp.i1 = getValueI1(*in); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(seqan::Pipe&, const TCommand&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >; TCommand = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TSpec = seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >, seqan::Filter >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 165 | me.tmp.i1 = me.last.i1; BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(seqan::PairDecrementer_&, const TLimits2&) [with TPair = seqan::Pair >; TLimits = seqan::String >; unsigned int m = 7; TLimits2 = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:418:11: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1119 | me.pos = TPair(0, 0); BUILDSTDERR: | ~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 438 | tmpRef->i1 = localPos; BUILDSTDERR: | ~~~~~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:4: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:9: required from 'bool seqan::control(seqan::Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::BitPacked<>; TPair = seqan::Pair >; TLimitsString = seqan::String >; seqan::ControlBeginRead = seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::Pair >, seqan::String > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 557 | tmp.i1 = localPos; BUILDSTDERR: | ~~~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<7, seqan::Tag > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 143 | last = *in; BUILDSTDERR: | ~~~~~^~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:11: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:5: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 584 | *cb->cur = pool.undefinedValue; BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:9: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(seqan::Pipe >&, const ControlBeginRead&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>; seqan::ControlBeginRead = seqan::Tag]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(seqan::Pipe&) [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TSpec = seqan::Namer >, seqan::Tag >, int> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 164 | me.last = *me.in; BUILDSTDERR: | ~~~~~~~~^~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:42: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 74 | const TStoredValue *sa = a.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] BUILDSTDERR: 75 | const TStoredValue *sb = b.i2.i; BUILDSTDERR: | ~~~~~^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:4: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >, seqan::Tag >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Sampler<3> >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 937 | *cur = Val_; BUILDSTDERR: | ~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tag >, int> > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Pair >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:27: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 361 | buffer[pool.handlerArgs(Val_)] = Val_; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:11: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Pair >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:13: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:9: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 567 | *cb.cur = item; BUILDSTDERR: | ~~~~~~~~^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TSource = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' BUILDSTDERR: 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:24: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:4: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:15: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 252 | *refNext = *I; BUILDSTDERR: | ~~~~~~~~~^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:9: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 253 | *I = *refPrev; BUILDSTDERR: | ~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:11: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 293 | *cur = *refPrev; BUILDSTDERR: | ~~~~~^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' BUILDSTDERR: 103 | inline Triple(Triple const &_p) BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /usr/include/c++/9/bits/predefined_ops.h:143:18: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 3, int> >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:81:17: required from 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1910:34: required from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1942:38: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: 171 | return i[k]; BUILDSTDERR: | ~^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /usr/include/c++/9/bits/predefined_ops.h:143:18: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 1, int> >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:81:17: required from 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1910:34: required from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1942:38: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' BUILDSTDERR: /usr/include/c++/9/bits/predefined_ops.h:143:18: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 2, int> >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:81:17: required from 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1910:34: required from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' BUILDSTDERR: /usr/include/c++/9/bits/stl_algo.h:1942:38: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 310 | _fileFormat = this->_checkFormat(*_istreamReader); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here BUILDSTDERR: 313 | case SeqIOFileType_::FILE_TYPE_AUTO: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here BUILDSTDERR: 144 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here BUILDSTDERR: 147 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here BUILDSTDERR: 151 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here BUILDSTDERR: 154 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here BUILDSTDERR: 158 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here BUILDSTDERR: 397 | case 5: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here BUILDSTDERR: 400 | case 4: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here BUILDSTDERR: 404 | case 3: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here BUILDSTDERR: 407 | case 2: BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] BUILDSTDERR: 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here BUILDSTDERR: 411 | case 1: BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: 399 | snprintf(buffer, 4, "%d", x); BUILDSTDERR: | ^ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from /usr/include/c++/9/cstdio:42, BUILDSTDERR: from /usr/include/c++/9/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/9/bits/basic_string.h:6493, BUILDSTDERR: from /usr/include/c++/9/string:55, BUILDSTDERR: from /usr/include/c++/9/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/9/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/9/ios:42, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 BUILDSTDERR: 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 68 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp [ 93%] Linking CXX executable ../../../bin/test_sflex_demultiplex cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -o ../../../bin/test_sflex_demultiplex -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Built target test_sflex_demultiplex make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= Scanning dependencies of target sflexQC make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=QUALITY_CONTROL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 95%] Linking CXX executable ../../../bin/sflexQC cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexQC.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexQC libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Built target sflexQC make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= Scanning dependencies of target sflexAR make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=ADAPTER_REMOVAL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 96%] Linking CXX executable ../../../bin/sflexAR cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexAR.dir/link.txt --verbose=1 BUILDSTDERR: /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types.h:43, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ at-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexAR libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Built target sflexAR make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= Scanning dependencies of target sgip make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp [ 98%] Linking CXX executable ../../../bin/sgip cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../../bin/sgip -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Built target sgip BUILDSTDERR: make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_cIn file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 169 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] BUILDSTDERR: 182 | if (c == EOF) BUILDSTDERR: | ^ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'bool seqan::compareIndelPair(TIndel&, TIndel&, TOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:278:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 278 | if(options.genotypeAware && predIndel.genotype != refIndel.genotype) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:281:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 281 | int sizeTol = int((double)abs(refIndel.indelSize) * options.sizeTolerance); BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&)': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:477:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 477 | for(TIndelIt it = begin(refIndels); it != end(refIndels); ++it) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 479 | for(TIndelIt it = begin(predIndels); it != end(predIndels); ++it) BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:33: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15: required from 'void seqan::findIntervals(const seqan::Graph&, const TPropertyMap&, TValue, TValue, seqan::String&) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15: required from 'void seqan::findIntervals(const seqan::IntervalTree&, TValue, TValue, seqan::String&) [with TValue = int; TCargo = int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:582:17: required from 'int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&) [with TIndelSet = seqan::StringSet; TGenome = seqan::StringSet, seqan::Alloc<> > >; TGenomeIDs = seqan::String > >; TOptions = seqan::IndelCompareOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:834:83: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:12: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1949 | act_prop = property(pm,act_knot); BUILDSTDERR: | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:15: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1961 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:16: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] BUILDSTDERR: 1982 | next_prop = property(pm,targetVertex(it)); BUILDSTDERR: | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:2: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' BUILDSTDERR: 398 | IntervalTreeNode(IntervalTreeNode const & other): BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:444:10: required from 'int readGFF(const char*, TIndelSet&, TSnpSet&, TGenomeMap&, TOptions&) [with TIndelSet = seqan::StringSet; TSnpSet = seqan::StringSet; TGenomeMap = std::map >, unsigned int>; TOptions = seqan::IndelCompareOptions<>]' BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:815:100: required from here BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] BUILDSTDERR: 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here BUILDSTDERR: 116 | class SimpleType BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29: BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', BUILDSTDERR: inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, BUILDSTDERR: inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, BUILDSTDERR: inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, BUILDSTDERR: inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, BUILDSTDERR: inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, BUILDSTDERR: inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, BUILDSTDERR: inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, BUILDSTDERR: inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] BUILDSTDERR: 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); BUILDSTDERR: | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/9/bits/exception_ptr.h:40, BUILDSTDERR: from /usr/include/c++/9/exception:143, BUILDSTDERR: from /usr/include/c++/9/ios:39, BUILDSTDERR: from /usr/include/c++/9/ostream:38, BUILDSTDERR: from /usr/include/c++/9/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:22: BUILDSTDERR: /usr/include/c++/9/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': BUILDSTDERR: /usr/include/c++/9/new:125:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here BUILDSTDERR: 125 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) BUILDSTDERR: | ^~~~~~~~ + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 omp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= Scanning dependencies of target variant_comp make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp [100%] Linking CXX executable ../../../bin/variant_comp cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/variant_comp.dir/variant_comp.cpp.o -o ../../../bin/variant_comp -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target variant_comp make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.b8dco8 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64 + cd seqan-1.4.2 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64 'INSTALL=/usr/bin/install -p' -C build/Release make: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/dfi/CMakeFiles/dfi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Built target dfi /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/compute_gain.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Built target compute_gain /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Built target fiona_illumina /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 6%] Built target fiona /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/mason/CMakeFiles/mason.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Built target mason /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 9%] Built target micro_razers /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/pair_align/CMakeFiles/pair_align.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target pair_align /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target rabema_do_search /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Built target rabema_evaluate /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Built target rabema_prepare_sam /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_build_gold_standard /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/razers/CMakeFiles/razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Built target razers /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/razers2/CMakeFiles/razers2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 20%] Built target razers2 /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Built target sak /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Built target sam2matrix /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/samcat/CMakeFiles/samcat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target samcat /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target seqan_tcoffee /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/seqcons/CMakeFiles/seqcons.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Built target seqcons /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/snp_store/CMakeFiles/snp_store.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target snp_store /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/splazers/CMakeFiles/splazers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target splazers /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/stellar/CMakeFiles/stellar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Built target stellar /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target tree_recon /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target seqan_extras /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/alf/CMakeFiles/alf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target alf /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target breakpoint_calculator /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/casbar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Built target casbar /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/four2three.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Built target four2three /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/bisar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target bisar /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target fx_fastq_stats /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_bam_coverage /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/gustaf/CMakeFiles/gustaf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Built target gustaf /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/insegt/CMakeFiles/insegt.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Built target insegt /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_sim.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_sim /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_methylation /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_frag_sequencing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_variator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Built target mason_variator /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_genome.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Built target mason_genome /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 56%] Built target mason_splicing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Built target mason_simulator /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_tests.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Built target mason_tests /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target mason_materializer /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target roi_plot_thumbnails /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Built target roi_feature_projection /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Built target bam2roi /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Built target test_funcs_param_chooser /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Built target param_chooser /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 72%] Built target razers3 /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Built target razers3_simulate_reads /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Built target razers3_quality2prob /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Built target rep_sep /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/join.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 79%] Built target join /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Built target search /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Built target seqan_flexlib /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 83%] Built target test_sflex_general_processing /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Built target seqan_flexbar /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Built target test_sflex_trimming /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Built target sflexFilter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 90%] Built target test_sflex_adapter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Built target sflexDMulti /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Built target test_sflex_demultiplex /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Built target sflexQC /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Built target sflexAR /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/sgip/CMakeFiles/sgip.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Built target sgip /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target variant_comp make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/dfi -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/dfi/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/dfi/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/dfi/example/fasta1.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/dfi/example/fasta2.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/fiona -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/compute_gain -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/fiona/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/fiona/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/fiona/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/mason -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason/example/SRR018294.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason/example/SRR018311.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason/example/SRR026674.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason/example/SRR049254.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/micro_razers -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/micro_razers/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/micro_razers/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/micro_razers/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/micro_razers/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/micro_razers/example/reads.fa.result -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/pair_align -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/pair_align/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/pair_align/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_prepare_sam -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_build_gold_standard -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_evaluate -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_prepare_sam -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_build_gold_standard -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_evaluate -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/rabema/LICENSE -- Installing: 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/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers2/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers2/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers2/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers2/example/reads2.fa gmake[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 sak_doc gmake[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2 /usr/bin/gmake -f CMakeFiles/Makefile2 core/apps/sak/CMakeFiles/sak_doc.dir/all gmake[3]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'. gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target sak /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/depend.internal". Dependee "/builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/depend.internal". Scanning dependencies of target sak_doc gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Generating README.sak.txt cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=txt > README.sak.txt [100%] Generating sak.1 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=man > sak.1 gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target sak_doc gmake[3]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 gmake[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[1]: Leaving directory 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/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.tar.gz -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.zip -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/param_chooser -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/param_chooser/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/param_chooser/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/razers3 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers3/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers3/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers3/example/genome.fa BUILDSTDERR: -- Installing: /builddir/build/BUILDROO+ mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/include/seqan + cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/include/seqan + cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/include/seqan + mkdir -p seqandoc + cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/variant_comp seqandoc + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan + rm -f 'seqandoc/*.txt' + mv 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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/variant_comp/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan/variant_comp/README make: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/bisar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/alf explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/breakpoint_calculator explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/bam2roi extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/breakpoint_calculator extracting debug info from 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/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/pair_align explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/param_chooser extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/param_chooser explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_build_gold_standard explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_evaluate extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_build_gold_standard extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_evaluate explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_prepare_sam extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rabema_prepare_sam explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/razers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/razers explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/razers2 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/razers2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/razers3 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/razers3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rep_sep extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/rep_sep explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/roi_feature_projection extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/roi_feature_projection explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/roi_plot_thumbnails extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/roi_plot_thumbnails explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/sak extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/sak explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/sam2matrix extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/sam2matrix explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/samcat extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/samcat explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/searchjoin extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/searchjoin explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/seqan_flexbar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/seqan_flexbar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/seqan_tcoffee extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/seqan_tcoffee explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/seqcons extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/seqcons explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/sgip extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/sgip explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/snp_store extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/snp_store explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/splazers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/splazers explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/stellar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/stellar BUILDSTDERR: explicitly decompress any DWARF compre24471 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs ssed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/tree_recon extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/tree_recon explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/variant_comp extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/bin/variant_comp original debug info size: 581904kB, size after compression: 519176kB /usr/lib/rpm/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match. Processing files: seqan-1.4.2-39.fc31.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9RVbDb + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.yVXDNa + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Provides: bundled(gnulib) seqan = 1.4.2-39.fc31 seqan(riscv-64) = 1.4.2-39.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) librt.so.1()(64bit) librt.so.1(GLIBC_2.27)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.2.3)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH) Processing files: seqan-devel-1.4.2-39.fc31.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.whH4j9 + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan-devel + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan-devel + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan-devel + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.BjPtBa + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-devel + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-devel + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-devel + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-devel + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-devel + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Provides: seqan-devel = 1.4.2-39.fc31 seqan-devel(riscv-64) = 1.4.2-39.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-doc-1.4.2-39.fc31.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Vetj77 + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan-doc + cp -pr seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/doc/seqan-doc + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.feW80a + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-doc + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-doc + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-doc + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64/usr/share/licenses/seqan-doc + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Provides: seqan-doc = 1.4.2-39.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-debugsource-1.4.2-39.fc31.riscv64 Provides: seqan-debugsource = 1.4.2-39.fc31 seqan-debugsource(riscv-64) = 1.4.2-39.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-debuginfo-1.4.2-39.fc31.riscv64 Provides: debuginfo(build-id) = 04ec88b96347d5f2b54aac6222393bb972c85787 debuginfo(build-id) = 073ce754cf3cec4413d22390c20dcb723d3cbc48 debuginfo(build-id) = 0997fa3fff5c0174d79307f10c08e936e4042cd1 debuginfo(build-id) = 0b4263150d9f2af9c67ba910ec9d301f24725a00 debuginfo(build-id) = 0d2cf9c0fc61c7817e935862b3b2e0156bebb935 debuginfo(build-id) = 0d5b915b1eec31e0b1e510a02f21b13051c0a876 debuginfo(build-id) = 14bfab5815d41ccff9331ca5953fbfee9718b001 debuginfo(build-id) = 168a79792d6b9626c2a10264e3d7c356e83eb75a debuginfo(build-id) = 2c76503cca7500325192a86c242f179ac9ac8f15 debuginfo(build-id) = 39f3c9fdc255568b74323c1a96ab9480b5b96b4f debuginfo(build-id) = 46a1a2005eba500de5e7b806ae62fe2f77fe26f3 debuginfo(build-id) = 46be7617b6a74d98f9d4963f474c357f045473f7 debuginfo(build-id) = 46f82caa59c56725d54cd977e6fcc260fb1021ff debuginfo(build-id) = 533547bef65a414826dac13338ee8b3519b89236 debuginfo(build-id) = 584f987eb2e763680bb9db56aa8aef65a21c72d8 debuginfo(build-id) = 5be0ca93230e3efd627e3762262ad532c02a3d3c debuginfo(build-id) = 68a91148635de90a01dad7bdb64c31273bfd1a71 debuginfo(build-id) = 6d1ad5ee5f6669eb85d59430958dd2dd1ac02336 debuginfo(build-id) = 82ea08549690a0d167711f7fcdc3f76e392655ce debuginfo(build-id) = 830caa219786c1e910567e424a200bd19d4e382a debuginfo(build-id) = 836a876f5d15982f3e07a7ec47b19fe2d1dd8f0f debuginfo(build-id) = 83c6e32095312511c0ad1908c6030f59be7b01b6 debuginfo(build-id) = 863fcc5d0977d12b64966a71fe71033e200bfeef debuginfo(build-id) = 8bdbb99fe205a379f9cef778df66a8d7454cae64 debuginfo(build-id) = 92a1447e1e078dc389481f8b6d440608dcfbded0 debuginfo(build-id) = 97425c895db0af29f11a4df5dc5f20bfc4ed4c53 debuginfo(build-id) = 9a3e7ac2d21953dfa06e96c9d716418f2ee1097f debuginfo(build-id) = a16723b611e63fcc9ed2ce325c1543a5bf7520b5 debuginfo(build-id) = a46d60a6f19bbada7d9a4ab7d755304f8655ab03 debuginfo(build-id) = a627bfcc3e4b7726270c424735a8d94becafb452 debuginfo(build-id) = ae21b3cdff63ab15d10d4298c5fb46d40f9a92eb debuginfo(build-id) = b510e3ea061c580645a12c8bfa1032d8079fa5ec debuginfo(build-id) = bfeaf4bfce0e88c0e4ed0ae6bddd1818ab65ae37 debuginfo(build-id) = c81d640761a781f8d1a518338c03e24c44db0efd debuginfo(build-id) = c8c66a494e72fd7301f5aff5a03e14c1503b9861 debuginfo(build-id) = ccfbbe6371cee680d06ba42251f903a090a32322 debuginfo(build-id) = cdbe7ac01b2cc5690d7e04e90cfd124ab39cc6dc debuginfo(build-id) = cfcff002bcc40a78388dc077f6d9e73b12e51255 debuginfo(build-id) = dcf9464bd8dc97445e4a53e953d26430acd74853 debuginfo(build-id) = e49e715ecaaea6c7d5f91df5c6bd70a0a19ff51a debuginfo(build-id) = e89e890b1b0f32f043b294a873a60104b68f65b0 debuginfo(build-id) = f456e06a49980722b17ce7688bde4e63eb2ffd41 debuginfo(build-id) = f70d63b731e588a3322e2adde56a1982aafaae8a seqan-debuginfo = 1.4.2-39.fc31 seqan-debuginfo(riscv-64) = 1.4.2-39.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seqan-debugsource(riscv-64) = 1.4.2-39.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64 Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-39.fc31.noarch.rpm Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-39.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/seqan-debugsource-1.4.2-39.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/seqan-1.4.2-39.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-39.fc31.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ZyYqpc + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-39.fc31.riscv64 + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0